Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3979 |
Symbol | |
ID | 4280870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4742718 |
End bp | 4743851 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638136800 |
Product | ABC-2 type transporter |
Protein accession | YP_752643 |
Protein GI | 114565129 |
COG category | [C] Energy production and conversion [P] Inorganic ion transport and metabolism |
COG ID | [COG1668] ABC-type Na+ efflux pump, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.508382 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATGA TACTCGCAAT GGTGCGCAAA GAACTCATCG ACGCCGCACG AGATAAACGA TCTGTTATGG CTGGTTTATA TTATGCCATT GGTACGCCGC TGATTATGTG CGGCATGTTT ATGGTGTTAA TTGGCCAGCT GTCTAGTCCA GAAGATTTAA ACATCAATAT CAATAATGCC GATAACGCTC CAGATTTAGT GCGCTACTTA AGTAATAACG GCATTAACCA CGGTGAAGAT GAACAAGCGA ATAAAATCAT CTTAACCATT AGTGACGATT ACGCCGCCAA CATGGCCAAA GCTAAACAAG CTGAAGTGAT ATTAATAGCC GACAATTCAG ATGAGAAGCT GCAAAAATCA ATTCGTCGAC TAGAGCGTCA ACTGCAAGCA TATAGTGCAG AAATGGGCAG CATTCGCTTA ATTGCACGCG GTATTAATCC CCGGATAACC CAGCCATTAA AGGTCAATAT CGAAGACAAA GCCACACCAG ACTCTAAAGG TGGGATGATT TTAGGCATCG CTATTTTCAC CATGATGTAC TCGGTATTTA TTTCCGGTAT GAACCTCGCG ATCGACACCA GTGCGGGTGA GCGTGAGCGT AACTCACTAG CACTATTGTT AAGCCACCCA ATGAGCACCC GCCAATTGGT CATCGGTAAA ATTATTGCCG TAACCTGTTT TGCTTTGCTC GGGTTAATCT TGATTTTACT GGTATCAAAA GTGGCTTACC CCTTTGTACC GTGGCAAGAA ATTGGCTTTA CCATCAACAT TAGCCAAGAC TTTATGGGCT TAATGTTCTT AGTGGGTATT CCAGTCGCCT TGATGGCCGC AACCTTACAA CTATATGTAT CGTTTATGGC TAAAACTTTT AAAGAGGCAC AATCATACTT AACCATGGTG TTATTTGTAC CACTGGCCCT TTCAATGGCA GCTAGTTACA ACATCGCTCC AGACATATTG CAATGGTTAC CCGTATCAGG CCAACAGCAA GCATTAATGG ACTTTATTAA AGGTCGTGAA ATACCAATGA TGCAGTTAAT TATTTCATCT GTGACCACAC TGATCATTGC CATTGCGTTG GCTGCAGGCT TAGAAAAGTC GCTTAAAAGT GAAAAAGTCG TCTTTGGTTT ATAA
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Protein sequence | MKMILAMVRK ELIDAARDKR SVMAGLYYAI GTPLIMCGMF MVLIGQLSSP EDLNININNA DNAPDLVRYL SNNGINHGED EQANKIILTI SDDYAANMAK AKQAEVILIA DNSDEKLQKS IRRLERQLQA YSAEMGSIRL IARGINPRIT QPLKVNIEDK ATPDSKGGMI LGIAIFTMMY SVFISGMNLA IDTSAGERER NSLALLLSHP MSTRQLVIGK IIAVTCFALL GLILILLVSK VAYPFVPWQE IGFTINISQD FMGLMFLVGI PVALMAATLQ LYVSFMAKTF KEAQSYLTMV LFVPLALSMA ASYNIAPDIL QWLPVSGQQQ ALMDFIKGRE IPMMQLIISS VTTLIIAIAL AAGLEKSLKS EKVVFGL
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