| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3956 |
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| Symbol | |
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| ID | 4280847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4720958 |
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| End bp | 4721740 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638136777 |
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| Product | haloacid dehalogenase, type II |
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| Protein accession | YP_752620 |
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| Protein GI | 114565106 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATCC GTGTTTTAAT ATCGCTTGCG ACAGCTTTTT TTATGCTTAA TACCAGTAGC
GCTTTTGCTA AAGATCCAGC AGATACTGCG GTGCAGCCAC TATTGGTTAA GCCTAAAGTG
ATTATTTTTG ATGTGAATGA AACCTTGTTA GATCTTGAAA ATATGCGCGC CTCTGTGGGT
AAAGCGCTTA ATGGCCGTGA AGATTTATTG CCATTGTGGT TCTCAACCAT GCTGCACCAT
TCTTTAGTGG TTTCAGCGAC AGGTGATTAC CAAACGTTTG GTAGTATTGG CGTTGCGTCA
TTGCAAATGG TCGCCGAAAT CAACGGTATT GCCATCACAC CAGAACAAGC TAAAACCGCC
ATTCTAACGC CACTTCGTTC ATTACCCGCT CACCCAGATG TTGCAGAAGG TTTAGCTAAA
TTGAAGGCCC AAGGCTACAA ACTAGTCACC TTAACCAACT CATCACTAGA AGGCGTAACC
TTACAGCTTA AAAATGCTAA TTTAAGCCAG TATTTTGATG CCAACTTAAG CATAGAATCT
GTTGGGGTAT TTAAGCCGCA TTTAAAAACG TACCAATGGG CCATTAAAGA TTTAGGCGTT
AATGCAGATG AAGCGTTAAT GGTTGCCGCA CACGGTTGGG ATATTGCCGG TGCAGATAAA
GCAGGCTTAC AAACCGCCTT TATTCGTCGC CAAGGTAAAG TGTTGTTCCC GCTAGCAGCG
CAACCAGACT ACAACGTACT GGATGTAAAC GAATTAGCTA GCACCCTAGC TAAGTTCAAC
TAG
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| Protein sequence | MKIRVLISLA TAFFMLNTSS AFAKDPADTA VQPLLVKPKV IIFDVNETLL DLENMRASVG
KALNGREDLL PLWFSTMLHH SLVVSATGDY QTFGSIGVAS LQMVAEINGI AITPEQAKTA
ILTPLRSLPA HPDVAEGLAK LKAQGYKLVT LTNSSLEGVT LQLKNANLSQ YFDANLSIES
VGVFKPHLKT YQWAIKDLGV NADEALMVAA HGWDIAGADK AGLQTAFIRR QGKVLFPLAA
QPDYNVLDVN ELASTLAKFN
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