Gene Sfri_3955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3955 
Symbol 
ID4280846 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4719406 
End bp4720638 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content46% 
IMG OID638136776 
Productimidazolonepropionase 
Protein accessionYP_752619 
Protein GI114565105 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1228] Imidazolonepropionase and related amidohydrolases 
TIGRFAM ID[TIGR01224] imidazolonepropionase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGTGGG ATCAAGTGTG GATTGATGTA AACGTGGCCA CCATGGATAC CAATATCCAA 
GGGGCTTACG GCGTAATACC TCAAGCGGCT ATCGCAGTAA AAGATGGCAA AATTGCTTGG
GTTGGCCCGC GCAGTGAACT ACCTGAATTT GATGTACTGG CAACCCCAGT TTACAGAGGC
AAAGGCGGCT GGATAACACC AGGGCTTATC GATGCACACA CACACTTAGT CTTTGCTGGT
AATCGCGCTA ACGAATTTGA ACAACGTTTA CAAGGCGCGA CTTACGCCGA AATAGCTCGC
GCAGGTGGCG GCATAATCTC AACGGTTAAT GCTTGTCGCG ATGCTGATGA AGCCGAACTA
TTTGAACTAG GCCGACAACG CTTAAATGCC CTAGCCAGAG AAGGAGTCAC CACGGTTGAA
ATTAAATCCG GTTACGGTTT AAACACTGAA ACAGAACTTA AATTATTGCG CGTTGCGCGT
GAGCTAGGTG AGCATCATCA TATTGATGTA AGCACCACCT TCTTGGGCGC CCATGCTATT
CCTCCAGAAT ATAAAGACAA TGCAGATGCC TATATCGACC TCGTCGTTAA TGACATGCTC
CCTGCGGTAA TCGCCGAAAA CCTTGCTGAT GCCGTTGATG TATTTTGTGA AAATATCGCC
TTTAATCTTG AACAAACTGA GCGAGTATTA ACTGCGGCTA AACAGGCCGG TCTGCAGATT
AAACTGCATG CTGAGCAATT AACCAATATG GGCGGCAGCG CCTTAGCAGC CAAGCTTGGG
GCTAAATCGG TCGATCATAT TGAGTTTCTA GATGAAGCAG GTATTAAAGC CATAAGCGAA
AGCGGTACCT GTGCAACCTT GTTACCCGGC GCATTTTACT TTTTACGTGA AACCCAATTA
CCACCAATCG ACTTACTGCG CCAATACAAG GTGCCAATGG TTATTGCCAG CGATTTTAAT
CCGGGGTCAT CGCCTATTTG CTCCACCTTA TTAATGCTCA ATATGGCTTG CACCTTATTC
AGACTCACCC CAGAAGAAGC CTTACAAGGT GTGACCATTA ATGCCGCAAA AGCACTTGGT
ATCGACAATA ATGTCGGCAG TATTACCGTA GGTAAACAAG CTGATTTTTG TTTATGGGAT
ATCACCACTC CTGCACAATT AGCTTATGCT TACGGGGTAA ACCTGTGTAA AACCGTTGTC
AAAAATGGTC AGGTAGTTGC GCTACCCAAT TAA
 
Protein sequence
MSWDQVWIDV NVATMDTNIQ GAYGVIPQAA IAVKDGKIAW VGPRSELPEF DVLATPVYRG 
KGGWITPGLI DAHTHLVFAG NRANEFEQRL QGATYAEIAR AGGGIISTVN ACRDADEAEL
FELGRQRLNA LAREGVTTVE IKSGYGLNTE TELKLLRVAR ELGEHHHIDV STTFLGAHAI
PPEYKDNADA YIDLVVNDML PAVIAENLAD AVDVFCENIA FNLEQTERVL TAAKQAGLQI
KLHAEQLTNM GGSALAAKLG AKSVDHIEFL DEAGIKAISE SGTCATLLPG AFYFLRETQL
PPIDLLRQYK VPMVIASDFN PGSSPICSTL LMLNMACTLF RLTPEEALQG VTINAAKALG
IDNNVGSITV GKQADFCLWD ITTPAQLAYA YGVNLCKTVV KNGQVVALPN