| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3954 |
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| Symbol | |
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| ID | 4280845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4718565 |
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| End bp | 4719308 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638136775 |
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| Product | transcriptional regulator, histidine utilization repressor, GntR family protein |
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| Protein accession | YP_752618 |
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| Protein GI | 114565104 |
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| COG category | [K] Transcription |
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| COG ID | [COG2188] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACATTAT TGTCTAAAAA ACCGAGAGCT GCTGATATGG CCCAAGCAAA GTTTGCCCAA
ATAAAACAAT TCATTTTGAG CCGTATTGAA ACGGGCGAAT GGCAAGAAAA CGACCGAGTG
CCGTCTGAAA ATCAGTTAAC TGAATTGTTT GCCTGTAGCC GTATGACAGC AAGGCGGGCG
TTAACTGAAC TGGTTGAATC GGGCGTGCTA GAGCGCACTC AAGGAGTGGG CACTTTTGTG
GCAGGTTTAA AGTCGCAATC GTCATTGCTG GCTATTCGTA ATATTGCCGA CGAGATAAAA
GACCGTGGCC ATGGCTACAG TGTTAACCAG CTTGAATTGA CACAAATTGA GGCCAGCACT
GCGGTGGCTA ATGCTCTGGG GCTGGAATTG GGCAGCCCTG TATTTTATTC GGTGTTGGTA
CATTGCGAAC AAGGCTTACC ATTACAAGTT GAAGAGCGTT ATGTGAACCC ACTGCTTGTG
CCTGATTACC TACAACAAGA TTTTAGTTCA CATACTCCAC ATGAATATTT ATCGGCGGTG
GCACCACTGA CAGAGGCTAA ACATACCGTT GAAGCCATTA TGGCTAACGA GCTGTTACAA
CAACGTTTAG CCATTGCGGC AACGGAACCC TGTTTACAAA TTTTACGTCG TACTTGGTCA
CGCCAAGGAG TGGTCAGTTT TGCTCGTTTA GTTCATCCGG GCAGCAAATT TAAACTAGGC
GGCCATTTAA CCTTTGCGCG TTAA
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| Protein sequence | MTLLSKKPRA ADMAQAKFAQ IKQFILSRIE TGEWQENDRV PSENQLTELF ACSRMTARRA
LTELVESGVL ERTQGVGTFV AGLKSQSSLL AIRNIADEIK DRGHGYSVNQ LELTQIEAST
AVANALGLEL GSPVFYSVLV HCEQGLPLQV EERYVNPLLV PDYLQQDFSS HTPHEYLSAV
APLTEAKHTV EAIMANELLQ QRLAIAATEP CLQILRRTWS RQGVVSFARL VHPGSKFKLG
GHLTFAR
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