Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3952 |
Symbol | |
ID | 4280843 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4715257 |
End bp | 4716795 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638136773 |
Product | histidine ammonia-lyase |
Protein accession | YP_752616 |
Protein GI | 114565102 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2986] Histidine ammonia-lyase |
TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGACTT ATTCATTTGA ACTTATTCCA GGTACGCTGA CATTAGCGCA GACTCGTGCG ATCAGCCGTA ATAGTGTCAA GCTGACCCTT GCGAAAGAAG CGATTAAAGA CATTAATCAA AGTGCTGAAA TCGTCCAGCA AGTATTACGT GAAGGCCGTA CTGTTTACGG TATCAATACT GGCTTTGGCT TGTTAGCCAA CACTAAAATT GTTCCAGAAG ATCTGCAATT ATTGCAACGC TCTATTGTAT TGTCCCACGC AGCTGGCATT GGTAAATACA TGCAAGATGC TACCGTGCGC TTAATGATGG TTTTAAAAAT TAACTCATTA AGCCGCGGTT TTTCAGGTAT TCGTTTAGAG GTTATCGAGT TTCTCATTCA GCTAGTGAAT GCCGGAGTGT ATCCGTGTGT GCCAGAAAAA GGCTCAGTCG GGGCATCGGG TGACTTAGCG CCATTAGCTC ACATGTGTTT ACCTTTGTTA GGTGAAGGCG AAATGAGCTA TCAGGGGCTG ATTATCTCAG CAGTGGAAGG TCTTGAGATT GCTGGGCTAA AACCTATTGA ATTAGCAGCC AAAGAAGGGT TAGCGTTACT GAATGGTACG CAAGCCTCAA CAGCGCTGGC GCTTGAAGGT TTGTTTAATG CAGAAGACTT GTTTGCCGCC AGTTCAATTA TTGGCGCCAT GAGTGTTGAA GCCGCTATGG GCAGTCGTAG TCCGTTTGAT GCGCGCATTC ATGCTGCGCG TGGACAAAAA GGCCAAATTG ACTCAGCAGC CATTTTCCGT CATTTGCTCA CTAACGAATC GGAAATTAGC CTAAGTCATA CCAATTGCGA AAAAGTGCAA GACCCATATT CACTGCGCTG TCAGCCACAG GTATTAGGTG CGTGCTTAAC CCAAATTCGT CAAGCAGCAG AAGTGCTTGG CGCTGAGGCA AACGGCGTTA CTGATAATCC ATTGGTGTTC CAAGATACGG GCGATATTAT TTCGGGCGGT AACTTCCATG CCGAACCCGT TGCGATGGCG GCTGATAACC TCGCGATTGC GATTGCTGAA ATGGGCTCAA TTTCGGAGCG TAGAATGGCG TTGTTGATTG ATTCTAGTTT GTCTAAGCTA CCGCCATTTT TAGTGGATAA CGGTGGGGTA AATTCTGGCT TTATGATTGC TCAGGTCACC GCGGCTGCAC TTGCATCGGA AAACAAAACC TATGCACATC CTGCCTCGGT AGACAGTTTG CCGACATCGG CAAACCAAGA AGATCATGTG TCGATGGCGA CATTTGCCGC ACGACGTTTA CGCTACATGA GCGAAAATAC CCGTGGAGTA TTGGCTATTG AGTTGTTAGC TGCTGCGCAA GGGTTAGACT TTAGAAAGCC TTTGCAACCA AGCGCCGCCG TAGCAATGGC CAAAGCCGAG CTTCGTGAAA TAGTGACGTT TTATGATAAG GACCGTTATT TTTCACCTGA TATTGAGAAC TCGGTCGACT TGTTGTATAG CGCCAGTTTT AACCGATTGC TACCGCAGGG CATGTTACCG AGTTTTTAA
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Protein sequence | MSTYSFELIP GTLTLAQTRA ISRNSVKLTL AKEAIKDINQ SAEIVQQVLR EGRTVYGINT GFGLLANTKI VPEDLQLLQR SIVLSHAAGI GKYMQDATVR LMMVLKINSL SRGFSGIRLE VIEFLIQLVN AGVYPCVPEK GSVGASGDLA PLAHMCLPLL GEGEMSYQGL IISAVEGLEI AGLKPIELAA KEGLALLNGT QASTALALEG LFNAEDLFAA SSIIGAMSVE AAMGSRSPFD ARIHAARGQK GQIDSAAIFR HLLTNESEIS LSHTNCEKVQ DPYSLRCQPQ VLGACLTQIR QAAEVLGAEA NGVTDNPLVF QDTGDIISGG NFHAEPVAMA ADNLAIAIAE MGSISERRMA LLIDSSLSKL PPFLVDNGGV NSGFMIAQVT AAALASENKT YAHPASVDSL PTSANQEDHV SMATFAARRL RYMSENTRGV LAIELLAAAQ GLDFRKPLQP SAAVAMAKAE LREIVTFYDK DRYFSPDIEN SVDLLYSASF NRLLPQGMLP SF
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