| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3943 |
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| Symbol | |
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| ID | 4280834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4703403 |
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| End bp | 4706159 |
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| Gene Length | 2757 bp |
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| Protein Length | 918 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136764 |
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| Product | DNA polymerase I |
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| Protein accession | YP_752607 |
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| Protein GI | 114565093 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000101899 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACGA TTCCCAATAA CCCGCTCATC TTAGTTGATG GTTCATCTTA TCTTTATCGC
GCTTATTATG CGCCGCCTCA TTTAACCAAT TCAAAAGGTG AAGCAACAGG CGCGGTTTAC
GGTGTTGTTA ACATGCTTCG TAGTTTATTA AGCCGTTACA GCCCTAGCCA TATCGCTGTT
GTTTTTGATG CTAAAGGCAA AACTTTCCGC AACGATATGT ACGGTGAATA CAAAGCCCAG
CGCCCACCTA TGCCCGATGA TCTGCGTAAT CAAATAGAAC CATTACACAG AATCATTCAC
GCAATGGGTT TACCTTTGAT CAGTATTTCT GGTGTGGAAG CCGATGATGT GATCGGAACC
ATCGCTCTTC AAGCCAGTAA AGAAGGCCGG GCGACATTAA TCAGTACCGG CGATAAAGAC
ATGGCACAGC TAGTGAATGA GCATGTCACG TTAATCAATA CCATGACAGA TACCATTATG
GGCCCTGAAG AGGTCAAAAC GAAATATGGT GTCGGTCCCG ATAGAATAAT CGATTTCTTA
GCTCTCATGG GCGACAAGTC AGATAACATT CCAGGTTTAC CTGGGGTTGG TGAGAAAACC
GCGCTGGCGA TGTTGCTTGG CATGGGAAGT GTAGAAAATA TTTTAGCTGA CCCACAAAGC
GTCGTTGAAG TTGGCTTTAG AGGCTCAAAA ACCATGCCGG CTAAAATCAT CGAAAACGCC
GACATGTTAA AGCTGTCATA TGAACTGGCG ACCATTAAAA CCGATGTCGA GTTAGCACAA
GACTGGCATC AAATGACAGT CAAGCCTCAA GACCGTGATG AACTCATTAA ATCCTTCGGT
GAAATGGAAT TCAAACGTTG GTTAGCAGAA GTACTCGATA ATAAACAACC CCGCGGTACC
ATCAGCCAAG ATAGCGAAGA AGAGGTCATC GTATCGCCAA CCATTGAAGC TGAGTATGAA
ACGATTCTGA CCATGGAAGC GCTTGATAAA TGGATTGAAA AGCTTAACAG CGCCGAACTG
ATAGCGATTG ATACCGAAAC CACCAGTCTC AACTACATGG AAGCGGAACT TGTTGGTTTA
TCATTTGCTA CCGAAGCAGG CAAAGCAGCC TATTTACCTT TAGCGCATGA TTACCTTGAT
GCGCCGCTGC AAATTGATAA AGCCAGCGCG CTTGAAAAAC TACGTCCGAT CCTTGAAGGC
GATACACCGC AAAAAGTAGG TCAAAACCTC AAGTATGATA TGAGTATTTT AGCCAACGCA
GGTATTAGCC TCAAAGGTAT ACGCTTTGAC ACTATGCTCG AATCCTATGT GTTTAATTCA
ATCGCATCGC GTCACGACAT GGACGGTTTA GCGTTAAAAT ACCTTGGCCA TAAAAATATT
AGTTTTGAAG AAGTCGCTGG CAAAGGCGCA AAGCAACTGA CTTTTAATCA AGTTCATTTG
GATATTGCTG GGCCATACGC CGCTGAAGAT GCCGATATCA CCCTGCGTTT ACATCAACAT
CTATGGCCAA GGCTTGAAAA AGAACCAGAA CTGGCCAGTG TATTTAATGA GCTAGAATTA
CCGTTAATTA AAGTATTGTC TGATGTAGAA CGTCAAGGCG TATTGATTGA TTCAATGCTA
CTTAGCCAGC AAAGTGGTGA GTTAGCCAAA AAGCTTGATG ACCTAGAAAA TAAAGCCTAC
GAAATTGCCG AGGAAAAATT TAACCTAGCT TCACCAAAGC AACTACAAAC ACTATTTTTT
GAAAAACTAG GTTATCCAAT AAAGAAGAAA ACCCCTAAAG GTGCACCATC AACAGCAGAA
GATGTGTTAA TCGAACTAGC TCTTGATTAC CCTTTACCTA AAGTTATTCT TGAACATCGT
AGCCTAGCCA AATTAAAGAG CACTTATACT GACAAACTGC CACTTATGGT TAATGCCACA
ACTGGCAGAG TGCATACCAG TTATCACCAA GCAAATGCTG CAACGGGTCG TTTGTCATCA
AGTGAGCCAA ACTTACAGAA TATTCCGATC CGTACTGAAG AAGGTCGTCG TATTCGCCAA
GCTTTTATTG CCCCTGCAGG TCGTAAAATT TTAGCTGCCG ATTACTCGCA AATAGAACTG
CGGATCATGG CTCATTTGTC TCAAGATGCA GGCTTGCTAA CCGCATTCGC AGAAGGCAAA
GATATTCATA AAGCTACCGC AGCAGAAGTA TTTGGGGTGC ACTTTGAAGA AGTCACCACC
GAGCAACGTC GCCGCGCTAA AGCGGTTAAC TTTGGCTTAA TTTATGGAAT GTCTGCGTTT
GGTTTAGCCA AACAGCTAGA TATTCCGCGC AATGAAGCAC AAAAGTATAT CGACACGTAT
TTTGCTCGCT ATCCAGGTGT ACTCAAATAC ATGGAAGAAA CCCGAGCCAT CGCAGCTGAA
TTAGGTTATG TATCGACATT ATTCGGACGT CGTTTATACT TGCCTGAAAT CAACGACCGT
AATGCAATGC GTCGTCAGGC AGCTGAACGT GCAGCGATTA ACGCTCCGAT GCAAGGAACA
GCAGCAGACA TCATCAAAAA AGCCATGATA GCCATTCACC AGTGGATTAA CCAAGACACT
CAAGGTGAAA TTACCCTGAT TATGCAAGTA CACGATGAAT TAGTGTTTGA AGTCGATGAG
GCCCAGGCTG AAACCCTCAA AACAAAAGTG TGTGACTTAA TGGCACAAGC AGCATCATTA
GATGTGACCT TATTAGCAGA GGCTGGCATT GGCGACAATT GGGATGAAGC CCACTAG
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| Protein sequence | MPTIPNNPLI LVDGSSYLYR AYYAPPHLTN SKGEATGAVY GVVNMLRSLL SRYSPSHIAV
VFDAKGKTFR NDMYGEYKAQ RPPMPDDLRN QIEPLHRIIH AMGLPLISIS GVEADDVIGT
IALQASKEGR ATLISTGDKD MAQLVNEHVT LINTMTDTIM GPEEVKTKYG VGPDRIIDFL
ALMGDKSDNI PGLPGVGEKT ALAMLLGMGS VENILADPQS VVEVGFRGSK TMPAKIIENA
DMLKLSYELA TIKTDVELAQ DWHQMTVKPQ DRDELIKSFG EMEFKRWLAE VLDNKQPRGT
ISQDSEEEVI VSPTIEAEYE TILTMEALDK WIEKLNSAEL IAIDTETTSL NYMEAELVGL
SFATEAGKAA YLPLAHDYLD APLQIDKASA LEKLRPILEG DTPQKVGQNL KYDMSILANA
GISLKGIRFD TMLESYVFNS IASRHDMDGL ALKYLGHKNI SFEEVAGKGA KQLTFNQVHL
DIAGPYAAED ADITLRLHQH LWPRLEKEPE LASVFNELEL PLIKVLSDVE RQGVLIDSML
LSQQSGELAK KLDDLENKAY EIAEEKFNLA SPKQLQTLFF EKLGYPIKKK TPKGAPSTAE
DVLIELALDY PLPKVILEHR SLAKLKSTYT DKLPLMVNAT TGRVHTSYHQ ANAATGRLSS
SEPNLQNIPI RTEEGRRIRQ AFIAPAGRKI LAADYSQIEL RIMAHLSQDA GLLTAFAEGK
DIHKATAAEV FGVHFEEVTT EQRRRAKAVN FGLIYGMSAF GLAKQLDIPR NEAQKYIDTY
FARYPGVLKY MEETRAIAAE LGYVSTLFGR RLYLPEINDR NAMRRQAAER AAINAPMQGT
AADIIKKAMI AIHQWINQDT QGEITLIMQV HDELVFEVDE AQAETLKTKV CDLMAQAASL
DVTLLAEAGI GDNWDEAH
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