Gene Sfri_3936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3936 
Symbol 
ID4280827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4696178 
End bp4697440 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content44% 
IMG OID638136757 
Product3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 
Protein accessionYP_752600 
Protein GI114565086 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1519] 3-deoxy-D-manno-octulosonic-acid transferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.200215 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCGTA TTGTTTATTC TTTGTTCCTA TATTTGTTGT TTCCGCTGGT GATTCTTTAT 
TTAGCATTTC GTGCCATAAA AAGTGTCGAC TATCGTAGCC GTTGGTCTGA ACGTTTTGGT
TTTGCTAAGT TAACCAAAAC GGATGTGTTG ATCCACAGTG TGTCGATGGG AGAAACGTTA
GCGGCGATTC CGTTGATTAA GCAGCTGATG ACTGCGCACC CAGATTACGT ATTTACCGTT
ACTACAACCA GTCCAACAGG GTCTGCTGAA GTGACTAAAG CATTTGGCGA TACAGTCCAG
CATTGCTATT TACCGTTTGA TTTTTCATAT GCAATTAAAC GTTTTTTACG CCAATTACAG
CCCAAAGTGT GCATTATCAT GGAGACCGAG TTGTGGCCAA ACTTAGTCCA CTTTGCAGAG
CAGCAAAACG TGACTCTGAT TTTAGCCAAT GCACGCTTAT CGCAAAAGTC CGCTGATAAA
TATGCTAAAA AGCGTCGTTT GGCTGTGCCG ATGTTAAACA AACTCAACTT GATTACCGTA
CAAACTAAAG CTGAAGCCGA ACGGTTTATT ACCCTGGGAG TGACTAGTCA GAGCATACAT
GTGTGTGGCA GTTTGAAGTT TGATCTCACT ATTGATCCCA TCAAAGAACA GCAAGCCAAC
ACGCTTCGAG CCAAGTGGGA TCGGGTTAAT TCACCTATTT GGGTTGCAGG GAGTGTTCAC
CCCGGCGAGT TTGAGGCCAT TTTGAGTGCT CATAAACAGC TATTAGCTTG TTTCCCGAAT
GCATTATTGA TTATGGCGCC TCGACATCCT GAGCAATTTA ATTTAGCCGC TATTACCATT
ACCCAATCTG GATTGGTGTT AGCGAGACGT AGTATGAATG ATGAGGTTAA TAGCCAGACT
CAGGTATTAC TTGGCGACAC TATGGGGGAG CTAGTGATGC TATACGGTAC AGCGGATCAG
GCATTTGTTG GTGGGACATT GATTAATAAT GGTGGTCATA ATCCGCTAGA GCCTGCTGCT
ATGGGGCTAC CTGTGTATGT TGGCCCCAAC CATTGGGATT TTGCTGAAAT TACCCAATTA
CTTGCCGATG CCGGCGCATT GATCTGTATT AGCTCTGCGG ATGAATTGGC GCAAGAATTA
CAAAATAAGT TTACCGATAG CCATATGTAT CAATCTGCGT CCTTTGCTGG ATTAGCTGTA
GTTGAGCAAA ATCGGGGCGC GCTTTTAAAG CAGTTTACCT TCATTAATGA ACTCATCGTG
TAA
 
Protein sequence
MNRIVYSLFL YLLFPLVILY LAFRAIKSVD YRSRWSERFG FAKLTKTDVL IHSVSMGETL 
AAIPLIKQLM TAHPDYVFTV TTTSPTGSAE VTKAFGDTVQ HCYLPFDFSY AIKRFLRQLQ
PKVCIIMETE LWPNLVHFAE QQNVTLILAN ARLSQKSADK YAKKRRLAVP MLNKLNLITV
QTKAEAERFI TLGVTSQSIH VCGSLKFDLT IDPIKEQQAN TLRAKWDRVN SPIWVAGSVH
PGEFEAILSA HKQLLACFPN ALLIMAPRHP EQFNLAAITI TQSGLVLARR SMNDEVNSQT
QVLLGDTMGE LVMLYGTADQ AFVGGTLINN GGHNPLEPAA MGLPVYVGPN HWDFAEITQL
LADAGALICI SSADELAQEL QNKFTDSHMY QSASFAGLAV VEQNRGALLK QFTFINELIV