| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3929 |
|---|
| Symbol | |
|---|
| ID | 4280820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4689438 |
|---|
| End bp | 4690391 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638136750 |
|---|
| Product | ADP-L-glycero-D-manno-heptose-6-epimerase |
|---|
| Protein accession | YP_752593 |
|---|
| Protein GI | 114565079 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGTTG TGACAGGCGC AGCCGGGTTT ATTGGTAGTA ATTTAGTAAA ACAACTTAAT
GCCATGGGCC GAAATGACAT TATTGCGGTA GACGACTTAA CCGACGGCAC CCAGATGTTC
AATTTAGCCG ATTGTGAAAT TGCTGATTAT CTTGATAAAG ATGATTTCAT TAAGCAAATC
AAAGCGGGCG ATTTTGATAA CAAACTTGAA GTCATTTTCC ATCAAGGCGC TTGCTCATCG
ACCACCGAGT GGGATGGCAA GTTTATGATG GCCAATAACT TCGAGTATTC AAAAACATTA
TTGCATTACA GCCAAGCTAA TAACTGCCAA TTTATTTATG CTTCTTCTGC ATCTGTCTAT
GGTGGCAGCG AAAAGTTTAT TGAGCAACGT GAACTTGAAA AGCCACTCAA TGTCTACGCT
TACTCTAAGT TCTTATTCGA TCAGTATGTA AGACAGCAAA AACTCACTGG TCAAGTGGCA
GGATTACGTT ATTTCAACGT CTATGGTCCG CGTGAACAAC ACAAAGGCGG CATGGCCAGT
GTGGCTTTCC ACTTTAACAA TCAAATTAAC ACTAATGGCG TGTGTCGTTT GTTTGAAGGT
GTTGATGGTT ATGAAAATGG TCAGCAACTT CGTGATTTTG TGTTTGTCGA AGATGTGGTT
AAAGTCAATT TATGGCTATG GCAGAATCCA TCTGTATCGG GCATATATAA CTGCGGAACA
GGCCAAGCGC AAAGCTTTAA TGATGTTGCC AATGCTGTGA TTGCTTATCA TGGTAAAGGG
CACATTGAAT ACATTCCTTT CCCAGACAAA TTGAAAGGCG CTTATCAAAG TTATACCCAA
GCAGATTTAA CTCAATTAAG AGCTGCTGGT TATCAAGGTG AGTTTAAAAC GGTTGAGCAA
GCAGTACCGG AATATTTAGA TTGGCTTAAA ACCCAACATT TTATTGGCCA ATAA
|
|---|
| Protein sequence | MIVVTGAAGF IGSNLVKQLN AMGRNDIIAV DDLTDGTQMF NLADCEIADY LDKDDFIKQI
KAGDFDNKLE VIFHQGACSS TTEWDGKFMM ANNFEYSKTL LHYSQANNCQ FIYASSASVY
GGSEKFIEQR ELEKPLNVYA YSKFLFDQYV RQQKLTGQVA GLRYFNVYGP REQHKGGMAS
VAFHFNNQIN TNGVCRLFEG VDGYENGQQL RDFVFVEDVV KVNLWLWQNP SVSGIYNCGT
GQAQSFNDVA NAVIAYHGKG HIEYIPFPDK LKGAYQSYTQ ADLTQLRAAG YQGEFKTVEQ
AVPEYLDWLK TQHFIGQ
|
|---|
| |