| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3903 |
|---|
| Symbol | |
|---|
| ID | 4280794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4658728 |
|---|
| End bp | 4660263 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638136724 |
|---|
| Product | transcriptional regulator, XRE family protein |
|---|
| Protein accession | YP_752567 |
|---|
| Protein GI | 114565053 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAATG AAAAAAGCTT AATGCGAAAG ACCCATTTTT TGGGCACAAA GATAAGAAAC
TTGCGTAAAC GCAATAACTT AACCATGGAA GACTTGTCTG CTCGTTGTGT GCGTGTTGAC
TCAGGTAACT CGCCGTCAGT GTCATACTTG TCAATGATCG AGCGCGGAAA ACGTGTTCCA
AGCGCTGATA TGTTGGCGGT AATTGCGGTC GTTTTTCAAA AAGAAGTGGA ATGGTTTCTT
GATGATGTGC CAGAAGATGA AGCGATTACG CCTGAAAAAG GCAATAAAGG CGGCATTAGT
GGTATGCCGC TAGAGCCGAG TTTTTTGTTC TCCAATGACA TTTTGCAAAT TGCCATCCCT
GAAATGTTGT CGCAAACCGG CACCAGTGGC CGCCAATTTG CTCATTTACT GATCCGCGCC
CACCAAGAAC ATCATCAAAA CCATTTTCCT GATTTAGAGC GTGCGGCCGA AGAAGTCGGC
TTAAAGCGTA TGCCGCTTGC CACCGAAGAT ATTATCGATA TTGCCAAAGG CATGGGTTTA
AAAATTAAAT GGATCGACCG TGCGCCTAAA GAAGTTATCA ACGAAATGGG CTTGAGTTCT
AAGCAGTTGG TGACCTCATT TTTTGAGCCA CCGGGAACCA TTTATATCAG TAATATTCTG
AAAAATAGAC CCAGCAGGTT GAGATATGAC TTGGCCGTGC ACATAGGTCA TTGTGTGTTG
CACAATAAAG ATGGCTTAAA AAGTGTGATG ATGTCTGGTC GCCGTGATGA CTTTGATGAT
GCGCTGGTTC CTCAGTCAAA CACCTTGAAT GCACAAGATA TTTTGCATGC ATGGCGTGAC
TTTGAATCAA GCTTTTTTGC GGGTGCGTTG TTGTGTCCTA AAGTGCCGTA TCGACAGTTA
CTTGACCGAC ATGGCTATGA GATTAGTGTG CATAAACAAC TGCAAGTGTC AGCGTCTGTT
GCTATGCGCC GCATGACGGT AGTGTCGCCT TATCCGCACT GGCATTACTT TGATGCCTAC
GCACCGGGTA AGCTAAAAGC GGTTTATCGT GGTAATGGTA TTCCTTTGCC TTGGGGTAAC
ATGCGCCTGG TAGAAGATCC TTGTCAGCAC TGGGCTGTGT TTAGAATGAT CAACGAGCCA
GTTGCAGGTA CGTCTGCGCA AATATCGATT TTAAATGTCG GTAATGAACC GCGCATTTAT
TGCTGTGAAT CGATTAAGGT TGATGACTCG GCAGGTAATC CGCATGTGTT ATGTGCGGGT
ATTGATTTAA ACCCGGCGAT TGAAGCGCAA GGCAAAGATG CGCAGTCGAT TGCACATGAA
TTAAAACAAG CTTGCTCAAC GGGCGGCGGT TCAATCATTA TCCCCAAACA TATCCAAAAA
GATCTCACTA GTGTGGCGAA AATCCTTAAT ATTAACTGGA TTGAACGTGG GATTAAAAAA
GATGCACAAC TAATTTGTTC GCGTGGAGCT GTGTGCCCAC GTCAACCAAG CTGTTATGCC
GCAGGGCGTA ATTTATGCGA GGGAGATCAA GGCTAA
|
|---|
| Protein sequence | MRNEKSLMRK THFLGTKIRN LRKRNNLTME DLSARCVRVD SGNSPSVSYL SMIERGKRVP
SADMLAVIAV VFQKEVEWFL DDVPEDEAIT PEKGNKGGIS GMPLEPSFLF SNDILQIAIP
EMLSQTGTSG RQFAHLLIRA HQEHHQNHFP DLERAAEEVG LKRMPLATED IIDIAKGMGL
KIKWIDRAPK EVINEMGLSS KQLVTSFFEP PGTIYISNIL KNRPSRLRYD LAVHIGHCVL
HNKDGLKSVM MSGRRDDFDD ALVPQSNTLN AQDILHAWRD FESSFFAGAL LCPKVPYRQL
LDRHGYEISV HKQLQVSASV AMRRMTVVSP YPHWHYFDAY APGKLKAVYR GNGIPLPWGN
MRLVEDPCQH WAVFRMINEP VAGTSAQISI LNVGNEPRIY CCESIKVDDS AGNPHVLCAG
IDLNPAIEAQ GKDAQSIAHE LKQACSTGGG SIIIPKHIQK DLTSVAKILN INWIERGIKK
DAQLICSRGA VCPRQPSCYA AGRNLCEGDQ G
|
|---|
| |