Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3902 |
Symbol | |
ID | 4280793 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4657311 |
End bp | 4658651 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638136723 |
Product | periplasmic sensor signal transduction histidine kinase |
Protein accession | YP_752566 |
Protein GI | 114565052 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATGGTG TCAAAAAACG CCCCAGTAAT TCGTTAAAAA CACGCTTATC TTATTGGATT TCAGCAGCCA TTTTGTCTGT TGCGATAATA GCAGCCAGCT TTACCTTTAG CAGTGCCTTT GAAGAAGCCC ATGAGCTCCA AGATGATGTA TTGCAACAAA TGGCCGTGCT GTTTGACCAT TACTCGCTTA CGCTAAACGA CAGAACACTC ACCCCGTTAA GCCAAGATCA GTTGGAGTTT CAGGTTTCAG TGCAGTTATT GGGTAGTAAC TCAGCAAGCA ATGCCTTAGC CCAAAATGCC CTAGCCTTGC CGAACAATTT AACCGATGGA TTTCATACGG TTAATTTAGC CAACCAATCT TGGCGAGTGT TTGTACGTAC CTTGTCATCC ACTCAACGTA TCGCCATCGC CCAAGATACT GCTATTCGTG ACGATATTGC GTTTGAAACC GCGCTGCACA CTCTGATGCC ATTGTTAGTA TTAATTCCAA TTTTACTGTT ATTACTGGGG TATATTTTAG GCAAAATTCT TGGCCCGATT AGTATTTTAG CCCACGAAGT TGACCGTCAA ACTGAGCACG ACCTACAGCT AATTCCCACC ACTCAATTAC CGAGTGAAAT AGTGCCCTTT GTTGAGGCAA TTAATCGTTT ACTCAGCAAA AATAGCCAGG TTATTGCTAG CCAAAAGCGC TTTATTGCCG ATGCTGCTCA TGAATTAAGA TCGCCCATAA CTGCACTGTC GTTACAGGCA CAACGTCTTC AGCAGACACA GTTAACGGAC GATGCGCGCC AGAAGCTTAA TGCACTACAA GCCGGAATAG GTCGCAGTAT TCATCTACTA GAACAACTAT TGTCGATGGC GCGTCAACAA GATAACAGCG TCCAACAACC TCAAACAATA TCGTTAAAAA TGGTGTTCGT TGAGGTGATT GAAGATCTGT ACCCACTTGC AGAAGCGAAA GAGATTGATT TGGGCTTTAG CCAAGATAAC GACGCCGAAC TCAATGCTAA TCCAGTCCGT TTAAAAACCT TAATTCACAA CCTTATCGAC AATGCGATTC GCTACACCCC AAATGGCGGT AAAATTGATT TAAGCATTAC TAAAACAGAT CAATACATTG AGATGACCAT CAAAGACACT GGTCCTGGTA TCGCCACAGA TGAAGCTCTA AAAGTGTTTG AACCCTTTTA TCGAGTATTG GGCAGTAACG AATATGGCTC AGGGTTGGGA TTAGCGATTG TGGCGAGTAT TGTGCAGCAA ATGGATGCAA AAATTAGCTT AGCGCCAACC GATGCCGTCA ATAACTGCGG GCTTTGCATT ACGGTGCGGT TTCCTCTTTA A
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Protein sequence | MDGVKKRPSN SLKTRLSYWI SAAILSVAII AASFTFSSAF EEAHELQDDV LQQMAVLFDH YSLTLNDRTL TPLSQDQLEF QVSVQLLGSN SASNALAQNA LALPNNLTDG FHTVNLANQS WRVFVRTLSS TQRIAIAQDT AIRDDIAFET ALHTLMPLLV LIPILLLLLG YILGKILGPI SILAHEVDRQ TEHDLQLIPT TQLPSEIVPF VEAINRLLSK NSQVIASQKR FIADAAHELR SPITALSLQA QRLQQTQLTD DARQKLNALQ AGIGRSIHLL EQLLSMARQQ DNSVQQPQTI SLKMVFVEVI EDLYPLAEAK EIDLGFSQDN DAELNANPVR LKTLIHNLID NAIRYTPNGG KIDLSITKTD QYIEMTIKDT GPGIATDEAL KVFEPFYRVL GSNEYGSGLG LAIVASIVQQ MDAKISLAPT DAVNNCGLCI TVRFPL
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