| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3882 |
|---|
| Symbol | |
|---|
| ID | 4280773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4635124 |
|---|
| End bp | 4636470 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638136703 |
|---|
| Product | phosphate-selective porin O and P |
|---|
| Protein accession | YP_752546 |
|---|
| Protein GI | 114565032 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3746] Phosphate-selective porin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.38657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTACCA AAACAGTATT CTCTATCTCC AGTGTTGCGC TGGCAATTTC AGTTGCGCTT
TTGTGTTTTC CCTCAAATGC AATGGCGGCT GATTCTGACA AAATCATCGA ACTAGAGCGG
CGATTAGATG CCCTTGAAAA AGAGTTAATT GAAGCAAAGG ATGCGGCAAA TAAAGTAGAC
CGAATTAAGT TTTCAAAAAG CAGTCCAACC CCAGAATTAA TATCTAAAGA TGGCAGTTCT
ACCCTTGAAT TTACCGGTCG TTTTCAAGCT GATTATGTCA GTGCTGATGA ACTGTACACG
GGTAACAAAT TCACTTATGA AGATAAATTT AACGATGCTA GCTTACGTCG TATCCGTTTT
GGTATTGAAG GTTATTTTTC AAATGTATGG AAATATGCTC TCGAATTTGA TTTTGACGGT
GAATCGGACG TTGAAATAAA AGATGCCAAT GTGAGCTATA GAGGCTGGGA CAATAATGAG
TTAACCATTG GCTTTCAAAA ATTTGGCTTT GGATTAGAAG CGACCGGAAG CTCAAAAAAC
TTGGCGTTTT TAGAACGAGC ATCAACGGAT ACATTCTCTC CAGAGCGAGG CATCGGTATT
GAGTGGGGTT ATATTGCCAA CTATTATAAT TTCAAAATTG GCTATGGTAT GAATGCCGGA
TTCGACGATG ACGACAAAAA TTTCCAACAA GATATTTTCA ATGCAAGATT CACCGCAGCC
CCCATCAATA ATAATGTCCA CCTGTTACAT TTAGGCGCAA GTGCGCTTTA CACCTTAAAC
AATGATGAAG TATTAGAAAC ACGTTACCGT GCTCGCCCAA GCAGCAAGCC AGCAGGTCGA
ATTATCGACA CTGGCAAATT TGATGCAGAC TCAACCCAAC ATTATGGTAT TGAAGCGGCT
TATCAACGTA ATAATCTGCT CTTGCAAGCC GAGTACATGA TCGCAAAAGC TGACCAAGTC
GATGACCCAA CAATTACTGT CGATAGCTAT TATGCTCAAG CCGTGTACAC CTTAACCGGT
GAAAGCTGGC AATACAGTAA CAAAAAAGGC ACCTTTAAAG CGATCAGCCC TGCAAGTGCC
ATTTCTGCTG GAGGTTACGG AGCTTGGGAA CTTGCAGTTA GGTATGACCA CGCAAACTTT
GATGATACTG ACTCAGATAT TATCGGCGGC AAAAAAACAG ACTATATCCT AGGTGTAAAT
TGGTATTTAG AAAATAACCT AAAAACTCAA CTTAACTATG TCCATACCAA AGCAGATTAT
AAAGAAGCTT ATGTCGACAT TGATGGTGTA ACGCGATACG ACCAAGATGG AAATATCATC
CAAGCTCGTG TGCAGTTTGC TTTTTAG
|
|---|
| Protein sequence | MTTKTVFSIS SVALAISVAL LCFPSNAMAA DSDKIIELER RLDALEKELI EAKDAANKVD
RIKFSKSSPT PELISKDGSS TLEFTGRFQA DYVSADELYT GNKFTYEDKF NDASLRRIRF
GIEGYFSNVW KYALEFDFDG ESDVEIKDAN VSYRGWDNNE LTIGFQKFGF GLEATGSSKN
LAFLERASTD TFSPERGIGI EWGYIANYYN FKIGYGMNAG FDDDDKNFQQ DIFNARFTAA
PINNNVHLLH LGASALYTLN NDEVLETRYR ARPSSKPAGR IIDTGKFDAD STQHYGIEAA
YQRNNLLLQA EYMIAKADQV DDPTITVDSY YAQAVYTLTG ESWQYSNKKG TFKAISPASA
ISAGGYGAWE LAVRYDHANF DDTDSDIIGG KKTDYILGVN WYLENNLKTQ LNYVHTKADY
KEAYVDIDGV TRYDQDGNII QARVQFAF
|
|---|
| |