| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3864 |
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| Symbol | |
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| ID | 4280755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4616831 |
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| End bp | 4617940 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638136685 |
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| Product | outer membrane protein RomA |
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| Protein accession | YP_752528 |
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| Protein GI | 114565014 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2220] Predicted Zn-dependent hydrolases of the beta-lactamase fold |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAT TAATGAGTCT TTTAGTCGTG CTTGGTGCAT TGATTGTCAT TATTTTGATC
AGTAAATATT GGTTTGCATC GCGTGGACAT AAAACACAAA TATTCAGCAA TACCGAAAAA
GTCTATCAAT CTGGTATTAG CAGCTTATGG CCAATTGCCA AAGCTTATGG GTCGGCAAAG
CGCCAAGCGC CCATTCCCCA AGGTGAGATT CCATTAGAAG CACTGACTCC AGAGATATTG
GATCAATCAA CGGAAGACAC TGTTTATCGT TTAGGCCATT CAACGTTATT GATGCGTCTT
GATGGTGAAT ATTTATTGAT TGACCCGGTA TTTAGCGAGC GAGCATCACC GGTGCAGTGG
GCTGGGCCAA AACGTTTTCA TCAATCGCCA ATCAGTATTG CTGATTTACC GGCAATAAAA
GCGGTGATTA TTAGCCATGA TCATTACGAT CACCTTGATA GAGCAGCCAT AGAGCAATTG
GCTGCCAAGG TGCAACATTT TGTGACCCCA CTTAAAGTGG GTGAGTACTT AACCACTTGG
GGCGTAGATG CCATTCAAGT GACTGAACTG GAATGGTGGC AGTCTGTTGA ATTAAATGGC
TTGAGCATTA CCGCTACGCC AGCACAACAT TTTTCTGGCC GGGGCTTGCT TGATCGTAAC
CAAACCTTAT GGGCTAGTTG GGTGATTCAA GGCTTACAAC ATAAGGTGTT TTTTAGCGGA
GACAGTGGCT ATTTTAATGG CTTTAAAGAA ATTGGTGAGC GTTATGGACC ATTTGATCTC
AGCATGATTG AAACTGGCGC CTATAATGAA TTGTGGAGTG ATATCCATAT GTTGCCAGAG
CAAAGCCTAC AGGCACATAT TGATGTTCAA GCAAAGGCAA TGATGCCAAT ACACAATGGC
ACCTTTGATT TAGCATTGCA TGATTGGTTT GAGCCTTTTG AACGTATTAA CCAGCTAGCA
AAACAGCAAA ATGTCACCTT GCTTACGCCA AAGTTTGGTC AAGCGGTGAT GTTAGCCAAT
CCACAAGCTA GCGAGTTATG GTGGCGTGCC ATTATGCTTG AACCACAAAA TACAGATGAA
TTAAATCAAG TTGTCATCAA CAGCAATTAA
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| Protein sequence | MKILMSLLVV LGALIVIILI SKYWFASRGH KTQIFSNTEK VYQSGISSLW PIAKAYGSAK
RQAPIPQGEI PLEALTPEIL DQSTEDTVYR LGHSTLLMRL DGEYLLIDPV FSERASPVQW
AGPKRFHQSP ISIADLPAIK AVIISHDHYD HLDRAAIEQL AAKVQHFVTP LKVGEYLTTW
GVDAIQVTEL EWWQSVELNG LSITATPAQH FSGRGLLDRN QTLWASWVIQ GLQHKVFFSG
DSGYFNGFKE IGERYGPFDL SMIETGAYNE LWSDIHMLPE QSLQAHIDVQ AKAMMPIHNG
TFDLALHDWF EPFERINQLA KQQNVTLLTP KFGQAVMLAN PQASELWWRA IMLEPQNTDE
LNQVVINSN
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