| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3862 |
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| Symbol | |
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| ID | 4280753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4612190 |
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| End bp | 4615345 |
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| Gene Length | 3156 bp |
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| Protein Length | 1051 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136683 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_752526 |
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| Protein GI | 114565012 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.395414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCGCT TTTTTATTGA TCGCCCTATT TTTGCGTGGG TGATTGCATT ATTAATTATG
CTTGCAGGTG TGTTAGCCAT TAAAGGCTTA CCCATTGCGC AGTATCCAAG TATTGCCCCG
CCAACCGTAG TGATCAGTGC TTTCTATCCT GGTGCTTCTG CCAAAACCAT GGAAGACACA
GTCACTCAGG TGATTGAGCA GCGCATGACT GGGCTTGATC ACTTACGCTA TATTTCATCG
ACCAGTGACA GTTTTGGTAA TGCCACTATC ACCTTAACAT TCAATGCTGA GGCTGATCCT
GATATTGCTC AAGTGCAAGT TCAGAATAAG CTGCAAGCGG CTACGCCATT ATTACCTTCT
GAGGTTCAGC AGCAAGGTGT CAAAGTTAAC AAATCTAGCT CTGGATTTTT AATGGTGCTT
GGCTTTGTGT CTGCAGATGG TTCAATGGGC AAAAGCGATA TATCTGATTA TGTTGCTGCC
AACGTTCAAG ACCCAATGAG CCGTGTACCT GGCGTGGGTG AGATCACGTT ATTTGGTGCG
CAGTATGCAA TGCGCATTTG GTTAGACCCG TTTAAGTTAA CTCAATACAA ATTAACCAGT
ATTGATATCG TTGCGGCAAT ACGTGAGCAA AATGCCCAAA TATCAGCAGG GCAATTAGGT
GGTGCTCCGT CGGTTGCTGG TCAAGAACTT AACGCGACCG TATCAGCACA GAGCCGCTTG
CAAACCCCAG AGCAATTTAA GCAAATTATT GTTAAATCTG ACTCATCAGG TGCTAACGTT
TATTTAGGCG ATGTTGCTAG AGTTGAGTTA GGTGCAGAAA GCTACGCGGT TGACTCATAT
TACAATGGTA AGCCAGCGTC GGGCCTTGCA TTCAAGCTGG CTACAGGCGC GAATGCGTTA
GATACGGCAG AAGGCATTAA AGCCAAAGTT AATGAGATGA AAGAGTTTTT CCCTCAAGGA
CTTGAAGTCG TTTATCCCTA TGATACAACG CCATTCGTAG AGCAATCGAT TGAAGGTGTT
GTGCACACAT TGATTGAAGC CATTGTATTG GTCTTCTTGA TTATGTATCT GTTCCTTCAA
AACTTCAGAG CAACGCTTAT TCCTACCATT GCGGTACCAG TAGTATTGCT AGGTACGTTT
GCGGTGCTAT CCGCTGCAGG TTTCACCATC AACACTTTAA CCATGTTTGC CATGGTATTG
GCCATTGGTT TGCTGGTGGA CGATGCAATT GTGGTGGTGG AAAACGTCGA ACGCGTGATG
TCGGAAGAAG GCTTAAGTCC GCTGGAAGCG ACCCGTAAAT CGATGGATCA AATTACCAGT
GCCTTAGTGG GTATTGGTTT GACCCTGTCA GCTGTATTTG TACCAATGGC ATTTATGTCT
GGGTCGACTG GTGTTATTTA TCGTCAGTTC TCGATCACCA TTGTATCGGC GATGGCCTTG
TCGGTGTTTG TGGCAATTGT ACTTACGCCA GCATTATGCG CCACCATGCT AAAGCCAGTT
AAAAAAGGTC ATACTCACGC TGATACCGGT TTCTTCGGGT GGTTTAACCG CAAGTTTGAT
GCAATGACCT CTCGTTATGA ATCAAGTGTG GGAAGTATTT TAAAGCGCTC ATTCCGCGTC
ATGTTGATCT ACGTTGGCTT GGTTATCGCA GTGGCTTGGA TTTTCTTACG CATGCCAACC
GCATTTTTAC CCGACGAAGA CCAAGGTATC TTGTTCACTC AAGCTATTTT GCCAACCAAC
TCAACCCAAG AAAGCACGGT TAAGGTATTA AAAGATGTAT CCGACTATTA CCTTACCGAA
GAAAAAGACC TGGTAAATTC AGTGTTTACT GTTGCGGGCT TTAGTTTTGC GGGTTCTGGT
CAAAACATGG GTATTGCGTT TGTGAGCCTA AAAGATTGGT CCACACGTGA AGCGCCTGGT
GAAGATGTTA AGTCGTTAGC GGGTCGAGCC ATGGGCCGTT TTATGCAAAT TAAAGAAGCG
TTAGTGTTTG CTTTTGTGCC GCCATCAGTG ATTGAACTGG GTACCGCAAA TGGTTTTGAC
GTCTACTTAA AAGACTTAAA TGGTCAAGGA CATGGCAAGT TAATTGAGGC GCGTAATCAA
TTATTAGGTA TGGCTGCACA AAACCCTAAC CTTGTTGGGG TGCGTCCAAA TGGCCAAGAA
GATGCGCCCA TCTATAAAAT TAATGTTAAT CACGCCAAAT TACGTGCATT AGACATTGAT
ATTAATAGTG TGAACAGTGT CTTGGGTACC GCGTGGGGTG GGTCGTATGT GAATGACTTT
ATCGACCGTG GGCGAGTGAA AAAGGTTTAT ATCCAGGGTG AGGCTAAATA TCGTATGCAA
CCTGGGGACT TAGACTCTTG GTATGTGCGC AACAATAATG GTGAAATGGT GCCATTTTCG
GCATTCGCAT CAGGTTCCTG GGAGTTTGGT TCTCCTCAGT TACAACGTTT TAACGGTGTG
CCTGCGGTTA ATATTCAGGG TGCTACCGCC CCGGGCTACA GTACCGGTGC TGCGATGGAT
GCACTTGAAG AAATGGCTGA GAAGCTTCCA CCTGGCTATG GCTTAGAGTG GAATGGTTTG
TCGTACGAAG AGCGTTTATC GGGTAACCAA GCGCCTAGCT TATATGCCTT ATCTATTTTA
ATCGTATTTT TAGTGTTAGC TGCATTGTAT GAAAGCTGGT CGGTACCATT ATCGGTCATT
TTAGTTGTTC CACTCGGGAT TATTGGTGCC TTGCTGGCAA TGAGTGCTCG TGGTCTGCCT
AATGACGTAT TTTTCCAAGT AGGCTTGCTA ACCACGGTGG GCTTGGCGAC TAAAAATGCC
ATTCTAATTG TCGAGTTTGC TAAGGAATAC TACGAGAAAG GTTCTGGCTT AATTGAGGCA
ACCTTGCATG CTGTTAGAGT ACGTTTACGC CCAATTCTAA TGACCTCTTT AGCATTTGGT
CTAGGTGTTG TGCCATTAGC GATTAGCTCA GGAGTAGGCT CTGGTAGCCA AAATGCCATC
GGTACTGCGG TATTGGGCGG TATGATGACC TCCACCTTCT TAGGTATCTT CTTTGTGCCG
TTATTCTTTG TGGTGGTTGA ACGCATTTTC AGTAAGCGTG AAAAACCCAC TGAAGAGGAA
AATGAAAAAG TTGATAATGA TAGAAAAGAT ATTTAA
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| Protein sequence | MARFFIDRPI FAWVIALLIM LAGVLAIKGL PIAQYPSIAP PTVVISAFYP GASAKTMEDT
VTQVIEQRMT GLDHLRYISS TSDSFGNATI TLTFNAEADP DIAQVQVQNK LQAATPLLPS
EVQQQGVKVN KSSSGFLMVL GFVSADGSMG KSDISDYVAA NVQDPMSRVP GVGEITLFGA
QYAMRIWLDP FKLTQYKLTS IDIVAAIREQ NAQISAGQLG GAPSVAGQEL NATVSAQSRL
QTPEQFKQII VKSDSSGANV YLGDVARVEL GAESYAVDSY YNGKPASGLA FKLATGANAL
DTAEGIKAKV NEMKEFFPQG LEVVYPYDTT PFVEQSIEGV VHTLIEAIVL VFLIMYLFLQ
NFRATLIPTI AVPVVLLGTF AVLSAAGFTI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
SEEGLSPLEA TRKSMDQITS ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SITIVSAMAL
SVFVAIVLTP ALCATMLKPV KKGHTHADTG FFGWFNRKFD AMTSRYESSV GSILKRSFRV
MLIYVGLVIA VAWIFLRMPT AFLPDEDQGI LFTQAILPTN STQESTVKVL KDVSDYYLTE
EKDLVNSVFT VAGFSFAGSG QNMGIAFVSL KDWSTREAPG EDVKSLAGRA MGRFMQIKEA
LVFAFVPPSV IELGTANGFD VYLKDLNGQG HGKLIEARNQ LLGMAAQNPN LVGVRPNGQE
DAPIYKINVN HAKLRALDID INSVNSVLGT AWGGSYVNDF IDRGRVKKVY IQGEAKYRMQ
PGDLDSWYVR NNNGEMVPFS AFASGSWEFG SPQLQRFNGV PAVNIQGATA PGYSTGAAMD
ALEEMAEKLP PGYGLEWNGL SYEERLSGNQ APSLYALSIL IVFLVLAALY ESWSVPLSVI
LVVPLGIIGA LLAMSARGLP NDVFFQVGLL TTVGLATKNA ILIVEFAKEY YEKGSGLIEA
TLHAVRVRLR PILMTSLAFG LGVVPLAISS GVGSGSQNAI GTAVLGGMMT STFLGIFFVP
LFFVVVERIF SKREKPTEEE NEKVDNDRKD I
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