| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3829 |
|---|
| Symbol | |
|---|
| ID | 4280720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4566645 |
|---|
| End bp | 4567847 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638136650 |
|---|
| Product | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase |
|---|
| Protein accession | YP_752493 |
|---|
| Protein GI | 114564979 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0452] Phosphopantothenoylcysteine synthetase/decarboxylase |
|---|
| TIGRFAM ID | [TIGR00521] phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCATCA TGCTGACAAA TAAAAAAGTA TTACTCGGAA TTGGTGGCGG TATTGCCGCA
TATAAAAGTG CGGACTTAAT CCGTCGATTA AAAGAGCGTG GCGCAGACGT GCGTGTCATC
ATGACTCAGA GCGCAATGGA GTTTATCACT CCATTAACCA TACAAGCGCT TTCAGGCCAT
CCTGTAGCCT CTGATTTGCT CGATCCCGCA GCAGAGGCTG CTATGGGTCA TATCGAACTT
GCTCGTTGGG CTGATGTTGT ATTGCTTGCA CCTGCTACGG CAAATTTAAT TGCACGTATT
AATGCAGGCA TGGCAGATGA CTTATTAACA ACAACCTGTT TAGCGACCAG TGCTCCCGTC
ATTGTCTGCC CTGCAATGAA CCAACAAATG TACCAAAATA TCGCTACCCA AGAAAACATG
GCTAATTTAG CCCGTAAAGG TTTTACCATT TGGCAACCCG CCTCAGGTAA TCAAGCATGC
GGTGAAGTCG GCCCTGGCAG AATGCAAGAA CCCGTCGTTA TGGCAGAACA AATGATACAA
TTTTTTGGCC CTAAAATATT ACAAGGCCAT CAGCTGCTCA TTACTGCAGG GCCAACGCGT
GAAGCAATTG ACCCCGTTCG CTATATATCT AATCACAGCT CAGGAAAAAT GGGTTTCTCT
TTAGCCCAAG CAGCCGCAGA AATGGGCGCA ACCGTCACAT TAATCTCAGG TCCGGTTAAT
CTAGCCACAC CAGCAGGTGT CACACGTATT GATGTGAGCT CAGCACAACA AATGCTCGAT
GCAGTGATGG GACAGGTTGA ACAACATAAT ATTTTTATTG GCTGCGCCGC AGTAGCCGAT
TATCGAATAG CTGATGTCGC GGATCAAAAA ATCAAAAAAT CGGCTGAACA AATGCAACTT
GCGCTAGTGC GGAATCCTGA TATCTTAGCC ACGGTAGCTC AGCACGCGAC TCGTCCATTC
ACAGTAGGTT TTGCAGCAGA AACCAACGAT GTAGAGCAAT ACGCCCGAGG CAAACTGCAA
CGCAAAAAGC TTGATATGAT TGCCGCCAAT GATGTCTCTA TTCAAGGCTT AGGCTTTAAT
GCCGATAGCA ATGCACTACA GGTATTTTGG CAAGACGGCA GCCAACAACT GCCCGCCACA
GACAAACTGA CACTGGCGCG CCAATTACTT ACATTGATAG AACAACAATT AAAAAAATCA
TGA
|
|---|
| Protein sequence | MCIMLTNKKV LLGIGGGIAA YKSADLIRRL KERGADVRVI MTQSAMEFIT PLTIQALSGH
PVASDLLDPA AEAAMGHIEL ARWADVVLLA PATANLIARI NAGMADDLLT TTCLATSAPV
IVCPAMNQQM YQNIATQENM ANLARKGFTI WQPASGNQAC GEVGPGRMQE PVVMAEQMIQ
FFGPKILQGH QLLITAGPTR EAIDPVRYIS NHSSGKMGFS LAQAAAEMGA TVTLISGPVN
LATPAGVTRI DVSSAQQMLD AVMGQVEQHN IFIGCAAVAD YRIADVADQK IKKSAEQMQL
ALVRNPDILA TVAQHATRPF TVGFAAETND VEQYARGKLQ RKKLDMIAAN DVSIQGLGFN
ADSNALQVFW QDGSQQLPAT DKLTLARQLL TLIEQQLKKS
|
|---|
| |