Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3828 |
Symbol | radC |
ID | 4280719 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4565471 |
End bp | 4566148 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638136649 |
Product | DNA repair protein RadC |
Protein accession | YP_752492 |
Protein GI | 114564978 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2003] DNA repair proteins |
TIGRFAM ID | [TIGR00608] DNA repair protein radc |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.760529 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGAATTA AAGATTGGCC ACAAGGAGAA GGGCCGCGAG AAAAGTTATT GCTCAAAGGT GCAGGACATC TTTCGGATGC AGAATTGCTC GCGGTGATAT TACGTAATGG TTTGGCAGGG CAAAATGCAG TGGATTTAGC CCGAAACATG ATTAATCAGT TTGGTGGTTT GCGCAGTTTA CTGAGTGCCT CTAAAAGCCA AGTATGTAAA TTAGCCGGTG TTGGGCCGGT AAAATATGCT CAATTACAGG CTGCAGTGGA AATTTCTAAG CGAATTGCCC ATGAAAATCT ACAAAGAGGG CAAATTTTGA CAAATCCTGA TTTAACTCGG GACTATTTAA TGAGACAATT GGCAGACCGA TCCTATGAAG TGTTCGCCTT ACTATTGTTG GATACCCAAC ATAGAGTCAT TCAATTTGTA GAATTATTTC GTGGCACTAT CGATTCTGCT TCTGTTTATC CTCGCGAGGT TGTAAGCCTT GTTTTGGAGA AAAAAGCGGC AGCGGTAATT GTGTGTCACA ATCACCCGTC TGGCATTGCA GAGCCAAGTC AGGCTGATCG GCGAATAACT GAGCGAATAA AAAATGCATT GGCAACCATC GATGTTTCTT TGTTAGATCA TATGGTTGTA GGTGATCAGG AGATAGTCTC CTTTGCCGAG CGTGGGTGGA TTGTATAA
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Protein sequence | MGIKDWPQGE GPREKLLLKG AGHLSDAELL AVILRNGLAG QNAVDLARNM INQFGGLRSL LSASKSQVCK LAGVGPVKYA QLQAAVEISK RIAHENLQRG QILTNPDLTR DYLMRQLADR SYEVFALLLL DTQHRVIQFV ELFRGTIDSA SVYPREVVSL VLEKKAAAVI VCHNHPSGIA EPSQADRRIT ERIKNALATI DVSLLDHMVV GDQEIVSFAE RGWIV
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