| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3822 |
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| Symbol | |
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| ID | 4280713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4559475 |
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| End bp | 4561322 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136643 |
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| Product | ATP-dependent DNA helicase RecQ |
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| Protein accession | YP_752486 |
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| Protein GI | 114564972 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATACTC CGATTTCGAC CAATATTGCG TCCTCAGATG TGTTGACGAC AGAGCAAGAT
GTACTTGCCG CGAGCCTGCA GCAAGTTTTT GGTTATCGCG CCTTTCGTGA AGGGCAGCGA
GAAGTCATTG AGCAAAGTTT ACAGGGCCAA GATACCTTAG TGATTATGCC TACCGGTGGC
GGCAAAAGTA TGTGCTATCA ATTGCCTGCT ATTGTGTTGC CTGGTGTGAC CGTGGTGGTG
TCGCCATTAA TTTCGTTAAT GAAAGACCAA GTCGACAGTT TACTGCAAAG TGGTGTGTCA
GCTGCTTATC TCAATTCATC TTTACCGCGT GAGCAAAGTG CAGAGGTGTT ACGCAAATTA
CATTCTGGTG AGATTAAATT GTTGTATGTC TCTCCTGAAA GACTATTGCG TCCTGATTTT
ATTGAGCGCC TGCAATCAGT CGATGTTTCG ATGTTTGCCG TTGATGAAGC GCATTGTATT
AGTCAATGGG GTCATGATTT TAGACCTGAA TATGCGGCTT TGGGTCAGTT AAAAGAATAT
TTCCCTTACT TACCTTTAAT GGCCTTAACT GCGACTGCAG ACCACGCCAC GCGTTTAAGC
ATTTGCGAAC GCTTAGGGGT GACCCCTTAT ACTTTATTGT CCAGTTTTGA CCGACCTAAT
ATTCGTTATA CCGTGGCAGA AAAACTCAAT GCGGCTAATC AATTGCGTCA GTTTTTAACT
ATCCAAAATG GCACCAGTGG TATTGTGTAT TGCAGCAGTC GTCGACGAGT TGATGAGGTG
GCTGAGCGTT TACGTTTACA AGGATTTAAT GCTCAAGCAT ATCATGCCGG TTTGAGCCAG
GAAGATCGTG GTAACGTTCA AGATAAATTT CTAAAAGATC AAGTTGATAT TGTGGTGGCT
ACGGTGGCCT TTGGAATGGG GATTAACAAA TCTAACGTAC GCTTTGTGGT GCATTACGAT
ATTCCTAAAA GCATTGAAGC TTATTACCAA GAAACAGGCC GTGCAGGCCG CGACGGTTTA
GATGCTGAAG CTTATATGTT GTTTGACCCT GCCGATATAG GCCGGGTTAG GCATTTGATT
GAGCAATCTG AACCTGGGCC CCAACAACAA GTCGAATTTC ATAAATTGCA TACCATGGCA
GCATTCGCTG AAGCGCAAAC TTGTCGTCGA CAAGTGTTGT TAAACTACTT TGATGAAGTG
GCTTCAAAAC CTTGTGGTAA CTGTGATATC TGCCTTGACC CACCTAAGCG ATATGATGGT
ACTGAAGATG CTCAAAAAGT GCTGTCTTGT ATTTATCGTT TACAGCAACG TTTCGGTATC
CACCATGTAA TTGAAGTATT ACGTGGTTCA AAAGCGGCCA ACATCGTAGA TAGAGGCCAT
GATAAGTTAT CGACATGGGG CATTGGTAAA GATAAATCAA CTGAGTTTTG GCTCAGTGTT
ATCCGCCAAT TAATTCATTT AGGTTTGATG AGTCAGGATA TTACCCGCGG CTCTGCAATT
AAGCTTAACC CTGCCGCAAG ACCAATCCTT AAAGCAGAAT TGTCGCTAAT GTTAGCGGAA
CCTCGGATTC AATTGATTGA TGTGAAGCGC AAACCCAATG GGCGTGCGCC GCAACAGTAT
GATCGTAAGT TATTTGCTCG GTTAAAATTA CTGCGTCGCG AACTGGCGGA AAAAAATGAC
ATTCCACCCT ATTTAGTCTT TAACGATGCA ACGCTCGCTG AGATGTGTGC GATGTTGCCC
ACAAGCCCTG GCGAGATGCT CGCAGTAAAT GGTGTCGGGC AGATTAAGCT TGACCGATTT
GGTGGCGAAT TTTTAGATGA AATTTCTGAT TATCTGACCA AAGGTTGA
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| Protein sequence | MDTPISTNIA SSDVLTTEQD VLAASLQQVF GYRAFREGQR EVIEQSLQGQ DTLVIMPTGG
GKSMCYQLPA IVLPGVTVVV SPLISLMKDQ VDSLLQSGVS AAYLNSSLPR EQSAEVLRKL
HSGEIKLLYV SPERLLRPDF IERLQSVDVS MFAVDEAHCI SQWGHDFRPE YAALGQLKEY
FPYLPLMALT ATADHATRLS ICERLGVTPY TLLSSFDRPN IRYTVAEKLN AANQLRQFLT
IQNGTSGIVY CSSRRRVDEV AERLRLQGFN AQAYHAGLSQ EDRGNVQDKF LKDQVDIVVA
TVAFGMGINK SNVRFVVHYD IPKSIEAYYQ ETGRAGRDGL DAEAYMLFDP ADIGRVRHLI
EQSEPGPQQQ VEFHKLHTMA AFAEAQTCRR QVLLNYFDEV ASKPCGNCDI CLDPPKRYDG
TEDAQKVLSC IYRLQQRFGI HHVIEVLRGS KAANIVDRGH DKLSTWGIGK DKSTEFWLSV
IRQLIHLGLM SQDITRGSAI KLNPAARPIL KAELSLMLAE PRIQLIDVKR KPNGRAPQQY
DRKLFARLKL LRRELAEKND IPPYLVFNDA TLAEMCAMLP TSPGEMLAVN GVGQIKLDRF
GGEFLDEISD YLTKG
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