| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3779 |
|---|
| Symbol | |
|---|
| ID | 4280672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4499635 |
|---|
| End bp | 4500486 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638136592 |
|---|
| Product | regulatory protein AmpE |
|---|
| Protein accession | YP_752445 |
|---|
| Protein GI | 114564931 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3725] Membrane protein required for beta-lactamase induction |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTAT TTTCATTATT AGTGGCAATT CTAGTTGAGC GTATGAAGCT TCTGCCGAGT
GGTTGGCAGT TCGATAGTGT GATGACGCGT TACCAAAAGC AGTTTTGGGA TAGCCAGTCG
CTAAAATCCG AAGTTGGTGT CGTGATTGCA ATCGTGTTAC CTGCCTTATT AGTCCTGTTA
ATCAGTTTTC TGCTTGATGG CATTTTTTTT GATTTATTGA GCTTATTGTT TTGGGTGTTG
ATATCGATTA TTTGTTTTAG TCACCAAACA TTACGAAGTG TGTTTAAGCA GTATATTCAA
GCGGCATGTC GCGGCGATGT ACAAGCTTGT TATCGTTACG CTAGCGAGTT GGATCCTACA
GAGTCTTTGG ATGTCGTGGA CGAACAGGAT TTAGGCCGCA AAGTAGGCCA AACGGTGGCG
TGGATTAATT ACCGCTATTA CGGCGCGGTG GCATTATATT TAATATTTTT AGGCCCTGTT
GGTGCCATTT TATATTGTAC GGTACGTTTT TATAGTGAGT ACAACAGTAA GAATAAGCTT
GAAATGCCAT TGGTAGATCG TTTACAGATG ATATTTGATT GGCTACCAAG TCGGGTGTTT
AGCTTTGGTT ATGTGTTAAG TGGCCAGTTT AGTGAAGGGT TAAGCGCTTG GAGACAATAT
GGTTTAAGTG TTAATACTGA AGCTAAAACA ATAGTGACCC ATACTGCGGT TGCCGCAGAG
TCTTTACCTG AAGCAGGAAA TGCGCCGTTG AGTGTGCAAT CTACTTTGGC ATTACTGGCA
TTGAGTAAGC GTAATTTTGT GTTATTGCTA ACCATGGTTT CTGTATTAAC TATTTTTGGT
TTTGTTAGCT AG
|
|---|
| Protein sequence | MALFSLLVAI LVERMKLLPS GWQFDSVMTR YQKQFWDSQS LKSEVGVVIA IVLPALLVLL
ISFLLDGIFF DLLSLLFWVL ISIICFSHQT LRSVFKQYIQ AACRGDVQAC YRYASELDPT
ESLDVVDEQD LGRKVGQTVA WINYRYYGAV ALYLIFLGPV GAILYCTVRF YSEYNSKNKL
EMPLVDRLQM IFDWLPSRVF SFGYVLSGQF SEGLSAWRQY GLSVNTEAKT IVTHTAVAAE
SLPEAGNAPL SVQSTLALLA LSKRNFVLLL TMVSVLTIFG FVS
|
|---|
| |