| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3778 |
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| Symbol | pdhR |
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| ID | 4280671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4498584 |
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| End bp | 4499336 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638136591 |
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| Product | transcriptional regulator PdhR |
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| Protein accession | YP_752444 |
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| Protein GI | 114564930 |
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| COG category | [K] Transcription |
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| COG ID | [COG2186] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTTATA TTAAGATTAA CCAGCCAAAA ATTTCTGATG TGATCATGGA GCAATTGGAG
CGGATGATCC TTGAAGGCAG TTTGCAGCCT GGTCAGAAAC TACCTCCTGA ACGCGAACTC
GCGGTACAAT TTGAAGTGTC TCGTCCTTCA TTACGTGAAG CGATTCAAAA ATTAGAAGCT
AAAGGGTTGC TCATGCGTCG TCAAGGCGGT GGCACCTATG TTAAAGAACA ACTGTGGCAA
AGTCTTGCCG ATCCTATCGT TGAATTAATG CATAACGACT CAGAAAGTCA GTATGACTTA
CTCGAATTCC GTCACGCCAC AGAAGGCATG ATGGCGTATT ATGCTGCGCT GCGCGGCACC
GATGCGGATA TGCAGAATAT TCAAAAACGA ATTATTGAAG TAGAAGCTGC GACGAATATT
GAGGCCAAAG CTGCTGCCAT TGTACGTTTT TATCGTGCGG TTGCTGAGGC GTCACACAAT
GTTGCTATGT TGCATTTAGT ATTAAGTTTA ACCCCTGTGC TGCACAAAAA TGTCGCACAA
AATTTGGAGC TTTTAAGCAT ACGCGAAGAA GCTTCCACCA TGGCAAATGA TCACAGACGC
GCGTTACTGG CTGCGATTAT ACGCCGGGAC CCAGACGCTG CACGTGAAGC TTCGAATGAG
CATTTAAGCT ACATCGAAGA AGTCATGTTG TCAGTAAGAG AAGAAGACAG TCGGTTGCAA
CGTAGTTTGC GCCGTTTAAA GAGCGGCGTG TAA
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| Protein sequence | MAYIKINQPK ISDVIMEQLE RMILEGSLQP GQKLPPEREL AVQFEVSRPS LREAIQKLEA
KGLLMRRQGG GTYVKEQLWQ SLADPIVELM HNDSESQYDL LEFRHATEGM MAYYAALRGT
DADMQNIQKR IIEVEAATNI EAKAAAIVRF YRAVAEASHN VAMLHLVLSL TPVLHKNVAQ
NLELLSIREE ASTMANDHRR ALLAAIIRRD PDAAREASNE HLSYIEEVML SVREEDSRLQ
RSLRRLKSGV
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