| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3774 |
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| Symbol | |
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| ID | 4280667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4487323 |
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| End bp | 4491786 |
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| Gene Length | 4464 bp |
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| Protein Length | 1487 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136587 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_752440 |
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| Protein GI | 114564926 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.293426 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAGAG CTGTATTGGT AAGCCTAGGC TGTTTTATAT TATCCTTATT TACGGTATTA
CCTGCATGTA GTGCAGACAT TGTTCAGCGA GTATTTAACG CCAAAGATGG TTTAGCTAAT
GCGACTATTC AAGACATTAG TTTTGACGGT TATGGTCACG TATGGCTAGC GACTCAACAA
GGTATTTATC GCGTTAGTAA TAGCAAGGTA AGGCGTATTG ATAAAGTGGG GTTTGATTCG
GTACTTGATG ATGAACTGAT TACAACAGTC GTTAATTCTG GCCAAGACCA TTTGCTTGTT
GGCACTAATT CCTCGTCATA TCTTTACAGT ATTTTAGACA ATCACTTCAG CTTATTGCTT
AAACCTGAAG ATAATGATGC GACTAATATC AATAAAAGTA TTCGCGTGGC GGCAACTCAG
CGTCAGCTTG ATGGACGGTT GCTGATGCTC GCTTACTCTG GCCAAGTGTA TTATTTTGAT
GATGCTTCTC AGCAATTGTC TTTATCTCCA AGCCATTCAT TAGACCACAA TTTACCTTGG
CGCAATGCGC TTGAGTTACA CAACTCCCAG TATTTGTTTT CGACTAATCA CGAACTTCAG
CTGCACCAGG CCGATGGAAC CTTCATTGGC ACATTTCCGT GGTCTGATAA AAACGATTCC
ATCAGAAAGT TGTTCCAAGA TAAACAACAA AGAGTGTGGA TGCTGACATC GAAAGGGTTA
TTTAAGGTCG ATACTGAGAC GCTTACCGTG CAATCGGTGC CTGAAATCCC CTATTATGTT
GATCAAATGG AACAAGATCT TAATGGTGAT TTGTGGATTT CAAGCCGAGC AGGATTGATA
TTTTGGAGTC CAGAAAACAA CAAATTAACC GTACACCGTG ACGAGCTTAA GCAGCGAGCC
AATATTGATT ACATTCATGA TATGGCGGTG GATTCTGATG GTTTATTGTG GGTTGGTGGT
TCTGGTGATG GGTTGGCGGT GATTGCTGGT AAACCTCATT TTTTAATTGA AGATTATTCT
AAAAAGCCAC CCTATCAACT TGATAATGAA ATGGTGTGGT CGGTATACAG CGAAGGCGAT
AAGGTGTGGC TAGGTACCGA TGGTGGTTTG TCTGTAGTTA ACACTCAGAA CCAAACTTCA
ACCATGGTTA TTCCCACAGG TTTTGCACTG AGCGACAGTA TTTACCGGAT TGAATCCTTG
AACGCGGAGC ATCTTGTATT GGCCACTACC AGTGGCTTAT ATGTAGTCAA TAAAAAGACT
AATGTCAGAA CCGATTTCGC TACTTGGAGC GGTGGTAACG AGTCACTAAA CGATAGAATT
GTTATTGGGA TTTATCGTGA TGAGCTACAC AAAGATGTTA TTTGGTTTAC CACCAATAAA
GGTCTGTATT ATTGGCAAGA TGGTAATGCT GATTTAACGT TACAAGTTTT ATCAGATGGG
CAGCAGTCAT TGAGTAATAC CTTTTATAAA GCTTTATTAA GGGATGATGC TGGCCATTTA
TGGATTAGTG GCGGTAAACA TTTTGGCTAT TTGACGACCT CTGGCGAATA TATTTCTAAA
GTGGATGTAT TTGCTGATTT TACTAATGTC CCAACCATGA ATAGTCTTAT GCAAGTGTCA
CCGGGTGTTA TCTGGTTAGG TACGTCCCAG CAAGGGATTT ATCAATTCAA TACTCAAACC
GATGAGGTTA TTTCGCTGGA TCAACAGTGG AAGATCGATT GTAAAGTGGT GTTCTTTTTA
CAAGATACTG AAACAGATCA TATCGTTGGC TGTGCCAGTG CCATTATTAA GGTTAATAAG
GCGACAGGTA AAGTCAGCTC GTATAGCCAT AAAGACGGTT TTATTTCCGA TGAATTTAAT
GAGTCGGCAA AATTTTATGA TCCTGCTAAA GGCTTTTTTG TGGGTACACC AGACGGAGCG
ATGTTAATCG ACCTCGATAA ACTGGCGCCG CGCACTGTTA ATGACAAAGT GATACTTGAA
TCTGTATCGG TGTTTTATGA AAACAATACC GAGGTTTATC TCATTCCAAG TCAATTGTCG
CAAGTAGAAC CCGGAGCCAG TTTAATTAGC TTTCAAATTG CCGTACTCGA TTACCTTGAT
GATAAGCCGA TGACCATACA GTATCGTTTG GTTAAAGATG GCGCAGACTC TGGCAATTAC
GTGCTATTAG AGGGCCAGTC ACAGATTAAT ATTACCGGTT TAAGCGCTGG GGCGTATGCA
CTTGAGCTTT TATATAAAAG AAATGGTGTG TGGTCGAATG AGCCATTTCA ATATCGATTT
ACGGTAAAGC AGTTTTGGTG GCGCTCGCAA CAATTTACTG GTGCATTGAT TTTTAGCATT
TTGCTGATAG CCGCCATTAT ATTGTTATAC AGACAGAGAC AAATTCATCG TTTTAAGCAA
ATGAATCATG CATTGGTTGA AAGTGACGAA CGCCTACGTC AATCGTTAAA AGGCAGTGAC
TCTGACCTAT GGGAATGGCA TGCATCAACA CAAGTGCTGT CACTCGATAA CCGAGGTGGG
GTATTAGGAC CAGACACGCA CATTAACGTT AAATTAGAAG ATATCCCAAT ACATCAAGAC
GATGTTGAGA GAATCACATC TGTGTGGCAG GACCTTGTTA ACGGTAAAGT GGAGATGATT
GATGCCGAGT ATCGATATCG TAATCAGCAT GATCATCAGT GGCATTGGTT ACGCATTAAA
GGCCGCGCTA TTGAGGTAGA TATTAACAAT GGAAGGTTAA TTTATGCTGC AGGGATGTAT
ACCGACATCA CTCAACAAAG AACCCTTGAA AGTGAAGCCA ATTTATTAGC TCAAGCATTT
GAAAATACCT CCGAAGGCAT GTTGATATTA GACATGAAAA AGAACATAAA AATTAGCAAC
GCAGCGGCTA ATTTAATTCT AGCGGCTAAA AAGAGTGATT TAGCTGGCAA ACCTTTTTCC
GATTTAGTGT TTGAGACTGT AGAGCCTTTT GACATGGAAG AGGTGTTCGA TAAGGAACGT
TTTTGGACTG GAGAATGTGA GTTTAATTGT AGTGATGGTA GCCGATGCCC TGTTTGGGTA
AATGTATCGA CCATGTTTAA TATGAATGGT TCGGCATTAC ATTATGTGGT GGTATTTTCA
GATATCACTG AACGTAAGCA TAATGAGTTA CATCTGCGCC GTTTAGCAAA CAATGACATG
TTAACTGGCT TAGCTAATCG AGCGATGTTT TCGCGTCGAT TGGGCCAAGT TATTGAAACG
GCAAAGCAGC AGAAAGAAAC CCTAGCGTTG TTATTTTTAG ATCTCGACAG ATTTAAACAT
GTTAATGACT CATATGGCCA CAGTATGGGT GATGCATTAC TCGTTGAAGC TGCAAGTAGG
CTGCAGTCTT GTTTGTCTGA AGAGCATTTG TTGTGTCGCT TTGGCGGTGA TGAATTTGTT
ATTTTGCTGC GTGATGCAAA AGACGTCGAC ACCATTAACC ACATTGCAAA ACAGTTATTA
AAACAAATAG AAACTCCTTT TAAATTATAC GGAAGAGAAT TTTTCATTTC GACCAGCATT
GGTATTAGCA TTTGGTCTGA TGATGATCAA ACGCCTGAAA CCTTGATTAA AAACGCCGAT
TTAGCCATGT ACCACGCTAA AGAAGAAGGC CGTGGTCATT TTCAATATTA TTCAGCAGAA
CGTAATGCAG AAGCGTTGTA TCACTTGCGC ATAGAGGCTG ATTTACATCG AGCGATACTG
TGCAATGAAT TTGAATTGTA TTATCAGCCT CAGATAGATG TCGACCAACA AAATAGTATT
GTTGGCGTTG AAGCATTAAT TCGTTGGAAA CACCCAAAAG ATGGCATGGT TAACCCCGAT
GTGTTCATTG GTATTGCAGA ATCTTGCGGC TTGATTGTTG AGATTGATCG TTGGGTACTT
ACCCAAGCTT GTCTCGACGG TGCAGATTGG CATCAGCGAT ATCAAAGCGA GATAACAGTG
TCGGTTAATG TGTCTGCAAT GCATTTTAGA CAACCAGATT TTATCGACTT TTTGACTGCG
ACATTGCATC AAACTGGTAT GCCTGCTAGA TGTTTGTCGG TAGAAATTAC CGAAGGCGTA
TTGATGAAAG AAATTGATAT TGCCAGCCAG CATTTACGCG CGTTAGAGCA GTTAGGTATT
GATGTTGCCA TCGATGATTT CGGTACCGGT TATTCGTCGC TTGCGTATTT ACGTTCATTC
CAAGTCAATA TTCTGAAAAT TGATCGCTCG TTTTTAATCC ATATTGACAC CCATCAAGCC
GATCAAGCCA TTGTGAGCAG TATTATTGAA TTAGCTCGTA ACCTATCCCT TGAGGTCGTT
GCTGAAGGCG TGGAAACATC TGAACAGCTT GCACAAGTCG TTCAGCGTGG CTGCCACATT
ATTCAGGGAT ATTATTTTGC CAAGCCGATG CCCAAAGCCG AACTTGAGCT CGATATTAAG
CGACAAATGG GGATTAATGA ATGA
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| Protein sequence | MTRAVLVSLG CFILSLFTVL PACSADIVQR VFNAKDGLAN ATIQDISFDG YGHVWLATQQ
GIYRVSNSKV RRIDKVGFDS VLDDELITTV VNSGQDHLLV GTNSSSYLYS ILDNHFSLLL
KPEDNDATNI NKSIRVAATQ RQLDGRLLML AYSGQVYYFD DASQQLSLSP SHSLDHNLPW
RNALELHNSQ YLFSTNHELQ LHQADGTFIG TFPWSDKNDS IRKLFQDKQQ RVWMLTSKGL
FKVDTETLTV QSVPEIPYYV DQMEQDLNGD LWISSRAGLI FWSPENNKLT VHRDELKQRA
NIDYIHDMAV DSDGLLWVGG SGDGLAVIAG KPHFLIEDYS KKPPYQLDNE MVWSVYSEGD
KVWLGTDGGL SVVNTQNQTS TMVIPTGFAL SDSIYRIESL NAEHLVLATT SGLYVVNKKT
NVRTDFATWS GGNESLNDRI VIGIYRDELH KDVIWFTTNK GLYYWQDGNA DLTLQVLSDG
QQSLSNTFYK ALLRDDAGHL WISGGKHFGY LTTSGEYISK VDVFADFTNV PTMNSLMQVS
PGVIWLGTSQ QGIYQFNTQT DEVISLDQQW KIDCKVVFFL QDTETDHIVG CASAIIKVNK
ATGKVSSYSH KDGFISDEFN ESAKFYDPAK GFFVGTPDGA MLIDLDKLAP RTVNDKVILE
SVSVFYENNT EVYLIPSQLS QVEPGASLIS FQIAVLDYLD DKPMTIQYRL VKDGADSGNY
VLLEGQSQIN ITGLSAGAYA LELLYKRNGV WSNEPFQYRF TVKQFWWRSQ QFTGALIFSI
LLIAAIILLY RQRQIHRFKQ MNHALVESDE RLRQSLKGSD SDLWEWHAST QVLSLDNRGG
VLGPDTHINV KLEDIPIHQD DVERITSVWQ DLVNGKVEMI DAEYRYRNQH DHQWHWLRIK
GRAIEVDINN GRLIYAAGMY TDITQQRTLE SEANLLAQAF ENTSEGMLIL DMKKNIKISN
AAANLILAAK KSDLAGKPFS DLVFETVEPF DMEEVFDKER FWTGECEFNC SDGSRCPVWV
NVSTMFNMNG SALHYVVVFS DITERKHNEL HLRRLANNDM LTGLANRAMF SRRLGQVIET
AKQQKETLAL LFLDLDRFKH VNDSYGHSMG DALLVEAASR LQSCLSEEHL LCRFGGDEFV
ILLRDAKDVD TINHIAKQLL KQIETPFKLY GREFFISTSI GISIWSDDDQ TPETLIKNAD
LAMYHAKEEG RGHFQYYSAE RNAEALYHLR IEADLHRAIL CNEFELYYQP QIDVDQQNSI
VGVEALIRWK HPKDGMVNPD VFIGIAESCG LIVEIDRWVL TQACLDGADW HQRYQSEITV
SVNVSAMHFR QPDFIDFLTA TLHQTGMPAR CLSVEITEGV LMKEIDIASQ HLRALEQLGI
DVAIDDFGTG YSSLAYLRSF QVNILKIDRS FLIHIDTHQA DQAIVSSIIE LARNLSLEVV
AEGVETSEQL AQVVQRGCHI IQGYYFAKPM PKAELELDIK RQMGINE
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