Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3773 |
Symbol | |
ID | 4280666 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4484950 |
End bp | 4487214 |
Gene Length | 2265 bp |
Protein Length | 754 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638136586 |
Product | patatin |
Protein accession | YP_752439 |
Protein GI | 114564925 |
COG category | [R] General function prediction only |
COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACAAA TTTTGCGCCT TAACTTATCT ACCTGGTTTT TGGCTAGCTG TATTTGCTTT AGCCTAGCAG TGCAACCTGT CTATGCTGCG AAAAAAGCCG CTAAAGAAAG ACCCACTATT GGCTTAGTGC TGAGTGGCGG TGGGGCAAAA GGTGCTGCAC ATATTGGTGT GTTGAAAGTA CTTGAAAAAT ATCATATTCC GGTCGATTAC ATTGCGGGTA CCAGTATTGG CGCTTACGTT GCTGGTATGT ACGCGTTAGG CTATAACGCC GACCAAATTG AAGAAATCAT GCTCAGTGGT GAATGGTCTA AAGGCTACTC AGACACTATT CCGCGCGATA AATTAAGCTA CCGCGATAAA CAGCAACGTG ATCAGTTTAA TATTCCACTG ACCGTGGGTT ATAACAATAA TAGCTTAACT TCACCTAGTG GTTTGTTACG TGGCCAAAGC ATGTCTCAAT TATTGCGCCA CTCGACAGGT TTAGTTGAAC AGTTTGGTGA CTTTGATGAA CTCGCGATTC CGTACCGAGC GGTGGCGACG GATTTAGCAA CCAGTGAAGC TGTAGTGTTA TCCAGCGGCA GTGTAGTACA AGCCATGCAA GCATCTGCCA CAGTACCAGG AGCATTGCAG CCAGCACTGA TTAACGGTCG TTTACTGGTT GATGGCGGAA TTGCCAATAA TATGCCTATC GATGTGGTGA AAGCGATGGG GGCAGATATT ATCATTGCCG TCGATATTGG TTCAGCACTG ACCAAACAAG AAAACTTAGA CAGTACTATT GCCGTACTAG AGCAGCTCTC AACCATTTTA ACTCAAGCGA GCACCGCCCG CCAAAAGACC TTACTGACGA CTGGTGATAT TCTCATTCGT CCCGCCATTG ATAGCCTAAG TACCACTGAT TTTTCAATCA TGCCATTAGC GCTTAAATTA GGTGAAGATG CCGCTATATT AGAGTTGGTG AAGCTAGAAC CGCTTGGTAT TGGTGAGCAA GACTATTTGG CTTATCAAGC GGATAAATTA CAACAAAGCT TAATGTGGAT CGATCCACTT AAAAAACCCA TCTATAAAAT TGCTTTTGAT AATCAATCAA AAGTCAGCGA AAAATTACTG CGCGATCGTT TAGGGATTAC CGAAGGCGTT GTACTAACCA AAGAAGAGTT AAATTTAGCC TTAAACCGAG TGTATTCATT GAATAAATTC GAGCGTGTCG ATGCTGAGTT TGAAGATGTT GAGCAAGGCC GAATTTTAAC CATTACCACC CGAGCAAAAT CATGGGGGCC GAATTACTTT CAAGCAGGCT TTAACTGGGA AGATGACTTC ACCTTAGATT CAGCTATTAC GTTAAGCTTG GCTTACACCA TGACCGACTT AACCGAAAAT GGTGGTGAGT GGCGTAATGA ATTAGAACTT GGGTATAAAA AGTTAGTCGG CACTGAGTTT TATCAACCAT TAGATCGTGA TCAAACATTT TATAGCCTAG CGCGATTCCA GTATGAAATG AAAGATTGGG ATTTAATTGA TCAAGATAGC CGTTATGTAG AACTCGAAAA TAATGTCGCT CAAATCGTTT TAGGTATCGG CTATAACTTT AATTCAGATG GAATTATCGA ATTAGGCTTT GTCGGCGAAG ATGGTCGGGT TAGCAGTGAA TTTGGCTCGG TTGATTCACT AGATTATCAT TCAACGGGTG GCTATTTTAA AGTGGCCTAC GACAGCCTAA ACAGCATTAG CTTCCCGACT GAAGGTAATC GAATTACCTT TGTCAGCTAC TTAAGAGACG AATCCTACAA TGGATTAAGC AATGTCGATA CGACCTTTAG TGATGATCTT GCTTGGCAAT TTGAAGCGGA TTGGAAGGGT GCGTTGAAAC TCGGAAATCA CGCCATTGTA GGTAAGGTGG AGCTGGCGAC CGTAGAGAAT GACGGTAACT TTACCTTGCA TGTGGCAGAT TTAGGCGGTT TCTTGAACTT GTCGGGTTTC CGTAAAGACA CCTTAATTGG TGCACATAAA GTGTTTGGGG CAGTGATTTA TCAATACGAT CTCGGCCGTG ATGTATTGAT CACCGACTTG CCTTTGTATT TAGGCACCAG TCTTGAAGCT GGTAATGTGT GGTTTGATCG TGATGATGTC GATTTAGATG ATTTAATTTA TGCCGGTAGT TTCTATCTCG GAACCGACAC CGATTGGGGC CCTGCAGCAT TAGGTTTTGG TTTTACCGAC CGCGGTGAAA CAGCATTTTA CTTATTTGTT GGTAAAAACT TTTAG
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Protein sequence | MQQILRLNLS TWFLASCICF SLAVQPVYAA KKAAKERPTI GLVLSGGGAK GAAHIGVLKV LEKYHIPVDY IAGTSIGAYV AGMYALGYNA DQIEEIMLSG EWSKGYSDTI PRDKLSYRDK QQRDQFNIPL TVGYNNNSLT SPSGLLRGQS MSQLLRHSTG LVEQFGDFDE LAIPYRAVAT DLATSEAVVL SSGSVVQAMQ ASATVPGALQ PALINGRLLV DGGIANNMPI DVVKAMGADI IIAVDIGSAL TKQENLDSTI AVLEQLSTIL TQASTARQKT LLTTGDILIR PAIDSLSTTD FSIMPLALKL GEDAAILELV KLEPLGIGEQ DYLAYQADKL QQSLMWIDPL KKPIYKIAFD NQSKVSEKLL RDRLGITEGV VLTKEELNLA LNRVYSLNKF ERVDAEFEDV EQGRILTITT RAKSWGPNYF QAGFNWEDDF TLDSAITLSL AYTMTDLTEN GGEWRNELEL GYKKLVGTEF YQPLDRDQTF YSLARFQYEM KDWDLIDQDS RYVELENNVA QIVLGIGYNF NSDGIIELGF VGEDGRVSSE FGSVDSLDYH STGGYFKVAY DSLNSISFPT EGNRITFVSY LRDESYNGLS NVDTTFSDDL AWQFEADWKG ALKLGNHAIV GKVELATVEN DGNFTLHVAD LGGFLNLSGF RKDTLIGAHK VFGAVIYQYD LGRDVLITDL PLYLGTSLEA GNVWFDRDDV DLDDLIYAGS FYLGTDTDWG PAALGFGFTD RGETAFYLFV GKNF
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