| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3751 |
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| Symbol | |
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| ID | 4280644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4458563 |
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| End bp | 4460233 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638136564 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_752417 |
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| Protein GI | 114564903 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGTGA TTAGATATGT TACTCCTCTG ATGTCGCTGT GCTTAGTTGC TTGCCAAACG
ACAGATAGAC CCGACCCACA AACAGCGAAA GCGGCTTTGA ATGAGTCAAG GCAGCAAGCT
GAGGCGAGTC AAGCCATTAC GCCACCTCCA GCGGCAATGC CTGAAGATGT TCAGCGCGAG
CTTAATGGTA ATAATGTGTT GAGCCAATCA GCAAGAGCGT TGCCTGCCGA GCGTCGTTTT
GATGTATCAG CCAATGAAGT TGATGCGAGA GTTTTTTTCC CCAGCTTAGT AAAAGACACT
CCATTGAGTG TCGCGGTACA TCCTGATGTA CAAGGTAAAA TTTCTCTATC TTTAAAGGCA
GTAACTTTGT CTGAAGCCAT TCAAGTTGTT GAAGACATTT ATGGATACGA AGTGAATCGA
GAAGGTCGTA TTTTACGTGT ATTCCCGTCG GGTATGAGAA CCGAAACTTT CCCCTTGAAT
TATATCTACA TGCAACGTGA AGGGTTGTCA TTAACCTCCG TTAGCTCAGG GCGCATTTCA
GACCAAAACA ATAATTCAAG CAATGGCAGT AACAATAGTA ATAGCAACAG CAGTAACAGT
AGTTCGAATA GTAATAGTAG CAATGGAAAT TCGAACAGCA GTGACAATAC CAATGGTACG
TTTATTCGTT CAACAACCAA GACAGATTTT TGGGGCGAGC TACAAGCCAC ATTAATGTCA
ATCATGGGTG AAACAGGTGG CGGACGACAA GTTGTGGTAA CCCCTCAAGC TGGGCTTGTT
ACTGTTCGAG CTTTCCCTGA TGAGTTACGT CAAATTCGAA GTTTCTTACA AATAGCCGAA
AGCCATCTAC AGCGCCAAGT GATTTTGGAA GCGAAAATTA TAGAAGTCAC TTTATCTGAT
GGTTACCAAC AAGGGATCCA GTGGGAAAAT GTCCTAGGTC ATGCAGGCAG TACCAACATT
GATTTCAGCA CTTCTGCAGG ACAAGGGTTA AGTAATGCGA TTACGTCTGC AATTGGCGGT
GTAACCTCGA TTAATTTCAC CGGAAGTGAT TTCAGCACCA TTATTAACTT GCTCGATACC
CAAGGTGATG TTGATGTACT TTCAAGCCCT CGTGTTACCG CTTCTAATAA CCAAAAAGCG
GTAATTAAGG TGGGCAATGA CGAATACTTT GTTACCGATG TATCCTCAAC GACTGTAGCG
GGTACCACTC CGGTAACGAC GCCGCAGGTT GAACTAACGC CATTTTTCTC TGGTATTGCG
TTAGATGTAA CCCCGCAGAT TGATGAATAT GGCAATGTAA TATTGCATGT TCATCCGTCG
GTAATCGATG TGACCTCACA AACTAAAGAA ATTAAAATTA GTGATTCAAC ATTAGAACTG
CCTCTTGCTC AAAGTGAGAT CCGTGAGTCG GATACCGTTA TCCGCGCTGC ATCAGGTGAT
GTGGTTGTTA TTGGTGGCTT AATGAAGAGT GAGAACATTG AAACTGTATC AAAAGTACCG
TTATTAGGTG ACATTCCTTT TCTGGGGGAA GCGTTTACCA GCCGTACTAA ATCTAAAAAG
AAAACTGAAT TGATTATTAT GTTGAAACCG ACTGTTGTTG GTGGAGACAC ATGGAAGGAT
GAATTAAAGC GTTCACAAGA TTTAATCGAG CGTTGGTATC CTTCTAAATA G
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| Protein sequence | MNVIRYVTPL MSLCLVACQT TDRPDPQTAK AALNESRQQA EASQAITPPP AAMPEDVQRE
LNGNNVLSQS ARALPAERRF DVSANEVDAR VFFPSLVKDT PLSVAVHPDV QGKISLSLKA
VTLSEAIQVV EDIYGYEVNR EGRILRVFPS GMRTETFPLN YIYMQREGLS LTSVSSGRIS
DQNNNSSNGS NNSNSNSSNS SSNSNSSNGN SNSSDNTNGT FIRSTTKTDF WGELQATLMS
IMGETGGGRQ VVVTPQAGLV TVRAFPDELR QIRSFLQIAE SHLQRQVILE AKIIEVTLSD
GYQQGIQWEN VLGHAGSTNI DFSTSAGQGL SNAITSAIGG VTSINFTGSD FSTIINLLDT
QGDVDVLSSP RVTASNNQKA VIKVGNDEYF VTDVSSTTVA GTTPVTTPQV ELTPFFSGIA
LDVTPQIDEY GNVILHVHPS VIDVTSQTKE IKISDSTLEL PLAQSEIRES DTVIRAASGD
VVVIGGLMKS ENIETVSKVP LLGDIPFLGE AFTSRTKSKK KTELIIMLKP TVVGGDTWKD
ELKRSQDLIE RWYPSK
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