| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3717 |
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| Symbol | |
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| ID | 4280610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4411467 |
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| End bp | 4413647 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638136530 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_752383 |
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| Protein GI | 114564869 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTCGT TCATAGCAGT AAAAGATGAT AACACCATGA AATTAAATAA AATTAGTTTA
GCTGTATTAT GTGCCATCAG CCTCAGTCAA CAGGCCATTG CCGCCGACAC AGTGCCTGAT
GAAAACACTA AAAAAGAAAA TATCGAAACA ATTGAAGTAA AAGGCAGTTA CATTGCCGGC
TATAACGCCC ACTCAGCCAG CGGCGCATCA CGCTTAGATT TAGCCATTAC CGATATTCCC
CAATCTGTTT CAGTCATTAC CGATGCCCAA TTGCAAGATT TTCAGTTGCA TGACATTAAC
GCGGCACTCG ATACCGCTAC CGGCGTCAAT GTTGAACGTA TTGAGACTGA CCGTACGTAT
TATACCGCTC GTGGTTTTGA CATTACGAAC TTCCAAATCG ATGGCATTGG TTTACCGCTA
ACATCTGGTA ACAACCATGC CGACGAAGAC ACAGCTATTT ACGACCGTAT TGAGGTCATC
CGTGGAGCCA ACGGTTTAAT GACTGGCGTA GGTAATCCAT CGGCAACCAT TAACTTCATT
CGTAAACGCC CAACAGCAGA CAATCAACTT ACGGTTAATG GTACTTATGG CAGCTTTAAT
AACACCCGCT TAGAAGCAGA CGGAACTGTC AGAATAAATG ACACCTTTGC CGCTCGTGCA
GTTGCCGTTA CCCAAAGCAA AGACTCTTAC TTAGATCGCT ACCAAACAGA CAAAAATGTC
TTTTATGTGT TTTTAGAAGC CAACTTATCT GACGACACTA GTTTGTCACT AAGCCACAGT
TACATGAATA ACGATGCTAC CGGCAATAAC TGGGGCGCGT TACCGTTATA TTATACTGAC
GGCAGCGCGA CTAATTACGA CAGATCGACC AATACCTCTG CCGACTGGTC AAACTGGCAA
GTTGTTAAAA ATAATACTGT GTTAGAGCTT AGCCATCATT TTAATGATGA TTGGCGTTTA
CGGGCGACTT ATTCACATAA AACAACCGAT GAAGATACTG AGCTATTTTA TGTTTTCGGT
ACGCCAGACA AGGATACCGA ATTAGGCTTA ACCGGTTATG GTAGCGAATA TGATTTAGAT
GATAAGCATG ACCTAATCGA TATGTATGTT GATGGTAACT TCAGCTTGTT TGGCCGAGAT
CATCAGATTG TAGCGGGGGT AAATTACTCT AAAATGAGCT ACACCGACAG CTCACTTTAC
GATTACACCA CCGGCAATGG CTTCCCCAAG ATGCCAGATC TCAACACCTG GGATGGCAAT
ACACCAAAGC CGACCTTCAA AGATAGCTTA CGTGGCAGTG ATGTCTCGCG TGAACAGCAA
GCCGCCTATT TCACCGGACG ATTTAACATC GTTGATGATT TGCACGTTAT CGTTGGTGGT
CGCTACAACG ACTGGCAGGC AGAAGGTGTG TCTTATGAAG TAGACCAAGA AGCTGACTAC
CAAAAGTTTA TCCCTTATTT AGGCGCCGTT TATCGCTTTA TGCCAGAGTT AGTGGCTTAT
GCAAGCTACA CCGAAACCTT TGTACAGCAA GATGAAGTGG ACATTGACAA TCGATTCCTT
GATCCCATTA CCGGTGAAAG CCGCGAAATT GGTTTAAAAA GTGAATTGTT TAATGGACGT
TTAATTGCCA GCCTAGCGTA CTTTGATGTG GTTCAAACCA ATATAGCAGT ACTTGACCCT
GCCACTGAAG GGTTACCAAT AGACTTACAG AAGTATTATG GTTCCGACGG TATCAGCAGC
ACAGGGTATG AAATCGATAT TGCTGGTGAA ATTTATTCAG GTCTTAATGT CAGTATTGGT
TATACCGATT TTGATATCGA AGGTGATGAT ATCGTTGCAG CTTACACACC AAGCAAGTTA
TTCAAACTAG CGGCCACTTA TGACTTTGAA GCCATTGAAG GATTCTCTGT TGGCATGAAC
ATGCGTTGGC AAGACGACAT CTCTCGCAAC CAAGGTGTCG TTGCCGTAGG GTTTGATAAT
GCAGGTGCTG ACATTGTCAC TAAGCAAGAC GCTTACACGG TTATCGACCT CATGGCTAAA
TATCAAATCA CCGAAAACTT AGGTTTAGCG GTTAATGCCA ATAACGTTGG CGATGAGAAA
TACATCAATA GTTTATATTG GGCTCAAGGG TATTACGGTG CACCTGCCAA TTATAGCGCG
ACCCTAACCT GGAAAATGTA A
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| Protein sequence | MDSFIAVKDD NTMKLNKISL AVLCAISLSQ QAIAADTVPD ENTKKENIET IEVKGSYIAG
YNAHSASGAS RLDLAITDIP QSVSVITDAQ LQDFQLHDIN AALDTATGVN VERIETDRTY
YTARGFDITN FQIDGIGLPL TSGNNHADED TAIYDRIEVI RGANGLMTGV GNPSATINFI
RKRPTADNQL TVNGTYGSFN NTRLEADGTV RINDTFAARA VAVTQSKDSY LDRYQTDKNV
FYVFLEANLS DDTSLSLSHS YMNNDATGNN WGALPLYYTD GSATNYDRST NTSADWSNWQ
VVKNNTVLEL SHHFNDDWRL RATYSHKTTD EDTELFYVFG TPDKDTELGL TGYGSEYDLD
DKHDLIDMYV DGNFSLFGRD HQIVAGVNYS KMSYTDSSLY DYTTGNGFPK MPDLNTWDGN
TPKPTFKDSL RGSDVSREQQ AAYFTGRFNI VDDLHVIVGG RYNDWQAEGV SYEVDQEADY
QKFIPYLGAV YRFMPELVAY ASYTETFVQQ DEVDIDNRFL DPITGESREI GLKSELFNGR
LIASLAYFDV VQTNIAVLDP ATEGLPIDLQ KYYGSDGISS TGYEIDIAGE IYSGLNVSIG
YTDFDIEGDD IVAAYTPSKL FKLAATYDFE AIEGFSVGMN MRWQDDISRN QGVVAVGFDN
AGADIVTKQD AYTVIDLMAK YQITENLGLA VNANNVGDEK YINSLYWAQG YYGAPANYSA
TLTWKM
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