| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3689 |
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| Symbol | |
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| ID | 4280582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4376853 |
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| End bp | 4378820 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638136502 |
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| Product | periplasmic sensor signal transduction histidine kinase |
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| Protein accession | YP_752355 |
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| Protein GI | 114564841 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACTC TATTGTTATT ACTTATCATC ATCACTATGC CTGTGCTCGC GCAAGACAGC
ATTGTCTTTG GCGTACATTC AAAAACAGCG CCATTAGAGT GGCGGAATAA CGGCGTTGAT
CAAGGCTTTA ATATCGAGTT GATGGATAGA ATTGGCCAGC TGACCAATAA GCGCATTATT
GTACGTCGAA AGAGTTTTCA ACAATTGGTA AAAGATGTTC ATGATCCTGA CAGCGATATC
GATGTGATTG CTGTGGTTAG CCCGGTGAAC ATGGATCGTA AGTTAGCGCA ATCTGATCCT
ATATATGCAA CCCACGCTAA AGCTTATACC TTGCAGGGTA AGGCGTTAAT AAACAATTGG
GCAGATCTTG TTGGTAAGCG GGTTGCTATT AAAAATGGTG CCTTTGTTGA TGTGTTTTTA
TCTGACCATC TGCAAAATTT CGACCGCGTG GATGTTGATT TGTATGAAAC CGGTTTTCAA
TTACTGATAA AAAACCAAGT CGACGTGGTT ATTGCCGAGA GTTTTGTTGC GCGGCGCTTA
CTTCCGCTAT ATCCATCGGT GCGAAGTTCC AGTGATGCGT TAATTTACGG GGCATTTAAT
TTTGTCGCGA ATGAGACAAA AACTGAACTG ATGTACCAAA TTAACGAGGC GCTTAGGCAG
TTAAAATTAT CGGGTGAATA CGACAAACTG GTTAATAAAT GGTTTGGCAC CGGGCGTGAA
AAAGTTGATT TAACCTCTTC CGAAAAGCGC ATGTTTGCCC TCGCAATTTT AGTAGCGATT
ATGTCTGCTA TTGGGATGAT TTTCACCGGG TTTATAAGCG CTAGTTTACG CCGCCATACT
AAAGCGCTCG ATGCCGAATT AATTCAACGA AAGCGGATTG AAGTTGAAAT ATCTGAATTG
TCACAACAGT TCCAATCTGT TCTCGATGGG CTTCCTAATG GCGTGACCAT AGTAAACCAG
GAACTCCAGC ATTTATGGAG TAACGATAAC AATATTCACT TGTTAGATTC AGATGAATTT
TACTATGTCG ACAACAATGT TTTTAAGCTT AAAGCCGCAG TATTAGAGGT GTTGTCGACT
CAAAAGTCGT TTACTGCCGA TATGCGGTAT CAGCAGCAAT TTTGGCAATT ACAAATTCAT
CCCATTGCCA ACAATCAGGT GGTGATTCTA CTTGAAGAAT CAACCGAGCA GCATCGATTA
CGCCAAGCTA ATGAAGAAGC CAGTCGTTTA GCTTCATTGG GAGAGTTGTC TGCGGGAATT
GCCCATGAAA TCAATAATCC AACCGGCCTT ATTGTACATG CAGTATCACT ATTTACCGCA
GCCATGAAAG ACTTAACGCC TGCCGCTAAG CACTATCAGA AACAAAATCC TTTCTGGCTT
ATTGCAGGGC TAAACCCAGA CATTGCTATT GAAGAGTTAC AGTATAGTTG TGGCTCTATA
GAAGAGGGTG CTAAACGTAT CAGTCGAATT GTTAATGACC TAAAGCGTTA CGCTATGCCG
CATATTGCTG ATCAATATAC CCTAGTGAGT TTAAATGATG TGGTTCAAGT GGCCCAGCGC
CTCACCGCGA ATCAAACAAA ATCTCACCAG ATCAGCACCA TGTTATGTGA TCCTAGCCCT
TGCATTACAG GCGATGCTCA ACAGTTACAT CAGGTGTTAA TTAACCTCAT TCAAAATGCG
TGTAATGCTT GCTCAACCCA GCCAGGGATA ATAGTGATAG ACACACATGT TGCAAACAAC
ATGGCCATAC TCAGTATTAA AGACAATGGC TGCGGGATGG ACAGTGCCAC ATTAAAACGT
ATTACCGAAC CCTTTTTCAC CACTAGGCGT AACGAAGGTG GTAGCGGCTT AGGGTTATCG
GTGTGCAGTA AAATAATTAA AGAACATCAA GGCGAAATGC AGATTCAGTC TACCTTAGGC
AAAGGCACGC AAATTCGACT TATTTTTGCA TTAGCACAAC AGGATTAG
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| Protein sequence | MKTLLLLLII ITMPVLAQDS IVFGVHSKTA PLEWRNNGVD QGFNIELMDR IGQLTNKRII
VRRKSFQQLV KDVHDPDSDI DVIAVVSPVN MDRKLAQSDP IYATHAKAYT LQGKALINNW
ADLVGKRVAI KNGAFVDVFL SDHLQNFDRV DVDLYETGFQ LLIKNQVDVV IAESFVARRL
LPLYPSVRSS SDALIYGAFN FVANETKTEL MYQINEALRQ LKLSGEYDKL VNKWFGTGRE
KVDLTSSEKR MFALAILVAI MSAIGMIFTG FISASLRRHT KALDAELIQR KRIEVEISEL
SQQFQSVLDG LPNGVTIVNQ ELQHLWSNDN NIHLLDSDEF YYVDNNVFKL KAAVLEVLST
QKSFTADMRY QQQFWQLQIH PIANNQVVIL LEESTEQHRL RQANEEASRL ASLGELSAGI
AHEINNPTGL IVHAVSLFTA AMKDLTPAAK HYQKQNPFWL IAGLNPDIAI EELQYSCGSI
EEGAKRISRI VNDLKRYAMP HIADQYTLVS LNDVVQVAQR LTANQTKSHQ ISTMLCDPSP
CITGDAQQLH QVLINLIQNA CNACSTQPGI IVIDTHVANN MAILSIKDNG CGMDSATLKR
ITEPFFTTRR NEGGSGLGLS VCSKIIKEHQ GEMQIQSTLG KGTQIRLIFA LAQQD
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