| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3686 |
|---|
| Symbol | |
|---|
| ID | 4280579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4372959 |
|---|
| End bp | 4373903 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638136499 |
|---|
| Product | cytochrome C family protein |
|---|
| Protein accession | YP_752352 |
|---|
| Protein GI | 114564838 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTCTC TCTATCAACT CGCCATGCTC ATTGGTTGCG GATTATTGGT AATGCAAAGT
GCTCATGCAT TACCGTGGGA CGATTTAACC GCAGAGCAGT TAGATACAAC ATTACAACAA
AAATTTACTG ACGGGAAATA TTCTCCTAAA GGGGCAGACT CTTGTCTTAT GTGTCATAAA
AAAAATGAAA AGGTGATGGA TTTATTTAAG GGAACTCACG GAAAGGTCAT TTCAGAGGCA
TCTCCAATGG CGGGCTTACA GTGTGAGGCA TGTCATGGCC CACAAGGTAA TCATAATCGC
GGTGGTAAAG AGCCGATGAT AGCTTTTGGT AAAGACAGCA AGCTATCTGC TCCAGCCCAA
AATACTGTTT GCCAAGGTTG TCATAATGAC CCTAAACAAA TGGCGTGGCA TACCAGCACT
CATAACTTAG AAGAAATTGC TTGTAGTGAT TGCCATACCA TTCATACAGC GAAAGACCCC
GCACTAGATA AATTGAGTGT GAATAACACA TGTACCTCAT GTCATACCCA ACAAAAAGCG
GATATGAACA AGCGATCATC GCATCCAATG AAGTGGGACC AAATGACCTG TATTGATTGT
CATTCTCCTC ATGGCTCAAT GAGCGAAAGC GCACTCAATA AACCAACGGT AAATGACACT
TGTTATAGCT GTCATGCTGA AAAACGTGGA CCTTTCTTGT GGGAACATGC TCCAGTAACA
GAAAACTGCG TCTCTTGTCA TAACCCTCAT GGCAGTGTCA ATGACAATAT GCTTGAAAGC
CGAGCACCAC AATTATGTCA GCAATGTCAT GCCAATGACG GTCATGCTAG CCGTGTTGTC
CCAGAACCTG GTATTGATTC ATTTGGTGGC GGCAAAAGTT GTTTGAATTG TCATAGCAAA
ATTCATGGTT CTAATCATCC TGCTGGCAGT TTGCTACAAC GTTAA
|
|---|
| Protein sequence | MRSLYQLAML IGCGLLVMQS AHALPWDDLT AEQLDTTLQQ KFTDGKYSPK GADSCLMCHK
KNEKVMDLFK GTHGKVISEA SPMAGLQCEA CHGPQGNHNR GGKEPMIAFG KDSKLSAPAQ
NTVCQGCHND PKQMAWHTST HNLEEIACSD CHTIHTAKDP ALDKLSVNNT CTSCHTQQKA
DMNKRSSHPM KWDQMTCIDC HSPHGSMSES ALNKPTVNDT CYSCHAEKRG PFLWEHAPVT
ENCVSCHNPH GSVNDNMLES RAPQLCQQCH ANDGHASRVV PEPGIDSFGG GKSCLNCHSK
IHGSNHPAGS LLQR
|
|---|
| |