| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3679 |
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| Symbol | |
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| ID | 4280572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4363740 |
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| End bp | 4365143 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638136492 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family protein |
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| Protein accession | YP_752345 |
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| Protein GI | 114564831 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGTAA AACCGGCGCG ACGACACGCA ATGCTGGCAC TGATTGTAGT GAGCTTGTTG
GGCTGCAGTA CTGTCGATAA TAGCAATTAC ATCGACCAAG CTAGCCAAGC ACAAGCAAAA
ACAAGCCAGC AGTTAATTGA ACAGCTATTA GCCACCAAAA ACACACAAGG TGTGCCGTCG
CAATCGTTAG CGCGACTCAC TGATTTAATC AATGTGCCTG AACTGCAAAC CTTTATATCA
GCCGCATTGC AAAATAATCC CAGCCTACAA CAAAGCGTAG TGGCGTTAAA TATGGCCTAT
GCTCAACACG GTATTACCTC TGCTAGTCGT TTACCATCTG TGGATGCCAG TTTTAGCGGT
ACTTCAACCG AAGACAGTGA TGACAGTTAC ACTACTGATA TTACCGTGAG TTGGGAGCTG
GATTTATGGC AAAAAATTGC TGACAGCAGT AATGCTGCGC TAAAAGACAT TGCCAGCACA
CAAGCCAGTT TACAGAGCGC ACAAGATTTA GTGGTGGCCA ACGTAATGCG CAGCTGGTTA
GACATTAGCC TTAAGCAACA ACTCGTGGCG ATTGAGACTC AGCGCTTAGC GGTATTAGAT
AACAACCAAG CCCTTATTTT AGCGCGGTAT CGCGTCGGTT TAGGCAGTTT AGAAGATCTG
GATAATGCCA CTACCAGCGT CGCCAGTACG CAAGCAACAT TAGTGGATTA TCAAGAACAG
CTCGCACAAA GTCGCCGTAA CTTAACCTTG CTAACAGGGC AGTGGACCGG CAGTGATGTC
AGTGTCGATA TTAGCGCCCA GTTCCCTACG GTTCTCAATC CAATCGATTC ACTCGGTCAG
CAAAACCTTG GGCGTCGTCC AGACATAAAA ACCGCATTTT ACAATATCGA AGCAGAATCA
TTACGTACCG ATGCCGCCTA TAAAGCCATG TTGCCATCCA TTAGTTTATC CGCCAGTTTG
AGTGATATGG CGCAGTCGCC AAGTGATGCA CTACTCACTG GACCACTATG GAGCGTACTT
GGACAGTTAT CTGCACCTTT GTTTCAAGGG GGAAAGTTAA CATCACAAGC GGAGTTGGCA
CGTTTAACGA CTCAGCAGCG CTATTGGGTC TACCAAGAAA CCTTATTAAA TGCGGTTAAC
GAGGTCGAAA ATAGCGTTGG CCAAGAGTAT TCCCTCGCCA AACAACAACA GCACTTAACC
GATGCGCAGC TTAGTGCCCA ACGCAGCTTT GTCAGTTATG AGCAAAAGTA TCGCCAAGGC
TTAGTCGATA TTTTTGATTT ACTGACCGTG CAACAGCAAA CCTTTGATGT TGAAGCGCAA
CTTGTTACTA CCATTTACAA CCGTCTCATA AACCGAATTG ATTTAGGCTT AGCGCTAGGT
CTAGGAGTCT CGCATGAAGC TTAA
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| Protein sequence | MMVKPARRHA MLALIVVSLL GCSTVDNSNY IDQASQAQAK TSQQLIEQLL ATKNTQGVPS
QSLARLTDLI NVPELQTFIS AALQNNPSLQ QSVVALNMAY AQHGITSASR LPSVDASFSG
TSTEDSDDSY TTDITVSWEL DLWQKIADSS NAALKDIAST QASLQSAQDL VVANVMRSWL
DISLKQQLVA IETQRLAVLD NNQALILARY RVGLGSLEDL DNATTSVAST QATLVDYQEQ
LAQSRRNLTL LTGQWTGSDV SVDISAQFPT VLNPIDSLGQ QNLGRRPDIK TAFYNIEAES
LRTDAAYKAM LPSISLSASL SDMAQSPSDA LLTGPLWSVL GQLSAPLFQG GKLTSQAELA
RLTTQQRYWV YQETLLNAVN EVENSVGQEY SLAKQQQHLT DAQLSAQRSF VSYEQKYRQG
LVDIFDLLTV QQQTFDVEAQ LVTTIYNRLI NRIDLGLALG LGVSHEA
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