| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3638 |
|---|
| Symbol | |
|---|
| ID | 4280531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4316217 |
|---|
| End bp | 4318043 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638136451 |
|---|
| Product | peptidase S8/S53 subtilisin kexin sedolisin |
|---|
| Protein accession | YP_752304 |
|---|
| Protein GI | 114564790 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1404] Subtilisin-like serine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAT CGACTATTTC AATGTCACTA TTAGCTCTTG GTCTTACAGC AACGGCACAT
GTACAAGCAA GCGACGACCG TTATGTCATT CAAGTTGACC CACAAAAAAA AGGGATTGTA
AAAGCTCTTG CCAAAAAATT AGGTGCACAA ATTAATGTTG ATGGAGAAGG TTTTATCGCC
GCGACGTTTA CCGGCAAAGA TTTAGATCAA GTTAAAGGAT TACTCAATAA CCCACACGTT
AAATTAATTG AAGAAGATCA ACGACGTCAT TTAATGGGCT TTTCCGACGA CATTGGTAAT
CCAATGACAA CCCAAATAAC ACCTTATGCA GTTTATCAAT CGCAAGCCGA TCAGGTCACA
TTCAACCCTA ATGCGGGCAT CAAAGTATGT GTAATCGACT CAGGTCTCGA TCGCAGTAAT
GCTGATTTTG TGTGGAATAA TATTACCGGT AACAACGACA GTGGTACAGG CAACTGGGAC
GAGAATGGTG GTCCACACGG TACACATGTA GCCGGAACTA TTGGCGCTGC AGATAACGGT
TTTGGCGTTA TTGGCATGGC TCCTGGTGTT GATATGCACA TCATCAAAGT ATTTAACGCC
GACGGGTGGG GTTACTCATC TGATTTAGCT CAAGCTGCAA ATCTTTGTTC ACAAGCGGGC
GCCAATATTA TTAGCATGAG TTTAGGTGGC GGCGGTTCAA ACTCAACAGA ATCAAATGCA
TTCCAAAGCT TCAGCGATGC TGGCGGGCTC GTCATTGCAG CTGCAGGTAA CGATGGCAAT
AATGTGCGTT CATATCCTGC AGGTTATTCA TCAGTGATGA TGATTGGTGC CAATGATAGC
AATAACGTTA TTGCAGATTT CTCTCAGTTC CCGACATGTA CATCGGGTAA AGGTCGTAAA
GTAACAACTG ATGAAACCAT TTGTGTTGAA GTTTCCGCCG GCGGTGTAGA TACCCTTTCA
ACCTATCCAG CAGGGCAAGC TACTGCGTCA AATTTATCAG CAGACGGATT CGCTCTTTCC
TCATCGGCAA TGGAAAACGC AGGTTCAGTA GTGGGTAACA CATTTTACAT GGGAACAGCT
GAGTCAACCA ACTCAGGTGC TAACGGTAAT ATTTGTGTGA TCGACCGTGG TGTAATTTCA
TTTTACGATA AAGTCGCTAA CTGTGAAGCA TCTGGTGGTG TCGGTGCCAT TATTATTAAT
AATGAACCAG GCATGCTGTA CGGTACATTA GGTGATACTA ATGCGACAAG TATTCCTGCC
GTTGGGGCAG CATTTGAAGA TAGATCAACC TTAGTTAATG CGGCAACTGC AAATATTGAT
ATTGGTACAT CAGACTTTGG CTTTATGAGT GGTACTTCTA TGGCTACTCC TGCGGTGTCG
GGAATTGCAG CCTTAGTATG GTCACAACAT AACGAATGTA CGGGCAGTGA AATCCGTGCA
GCACTTAAAG TCACAGCGTT AGACGCCGGA GCATCAGGTA AAGATGACTA CTTTGGTTAT
GGTATTGTGC AAGCTGCTGC TGCAGATGCT TATTTATCAA GTAATGGCTG TGCAGGCGGT
GGGGTAACTC CGCCACCAAC GGGCGGCGAT ATTACATTGT CACTTAATGG TTATAAATCG
AAAGGCGTTA ACAAAGTTGA TTTAACCTTT GGCGGTGCAA GTTCAGCCAA TGTAGACATT
TTCCGCAACA ACAGCAAAGT AACCACTACG GCAAATGACG GTAGCTATAC AGATAGTATT
TCAGCAAAAG GCGGTGGAAC ATACACTTAT CAAGTATGCG AATCTTCTAC TGCCACTTGT
AGTGCAGAAA AAAATGTCAC GTTTTAA
|
|---|
| Protein sequence | MKLSTISMSL LALGLTATAH VQASDDRYVI QVDPQKKGIV KALAKKLGAQ INVDGEGFIA
ATFTGKDLDQ VKGLLNNPHV KLIEEDQRRH LMGFSDDIGN PMTTQITPYA VYQSQADQVT
FNPNAGIKVC VIDSGLDRSN ADFVWNNITG NNDSGTGNWD ENGGPHGTHV AGTIGAADNG
FGVIGMAPGV DMHIIKVFNA DGWGYSSDLA QAANLCSQAG ANIISMSLGG GGSNSTESNA
FQSFSDAGGL VIAAAGNDGN NVRSYPAGYS SVMMIGANDS NNVIADFSQF PTCTSGKGRK
VTTDETICVE VSAGGVDTLS TYPAGQATAS NLSADGFALS SSAMENAGSV VGNTFYMGTA
ESTNSGANGN ICVIDRGVIS FYDKVANCEA SGGVGAIIIN NEPGMLYGTL GDTNATSIPA
VGAAFEDRST LVNAATANID IGTSDFGFMS GTSMATPAVS GIAALVWSQH NECTGSEIRA
ALKVTALDAG ASGKDDYFGY GIVQAAAADA YLSSNGCAGG GVTPPPTGGD ITLSLNGYKS
KGVNKVDLTF GGASSANVDI FRNNSKVTTT ANDGSYTDSI SAKGGGTYTY QVCESSTATC
SAEKNVTF
|
|---|
| |