| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3607 |
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| Symbol | |
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| ID | 4280500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4281646 |
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| End bp | 4283508 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638136419 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_752273 |
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| Protein GI | 114564759 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAATGT CTTGGCAAAC TACAGTAGAC CTCATCGCTA AGGTCGCTAA AGTGCCGGCA
TCATTAATCA TGAAACTGCA TGCAGATGAA ATGGAAGTAT TTGTTGCCAA CAATAACACC
GACAGCCCAT ATTCTCCTGG GATGAAGGAC AAGCTGGGTC ATGGCTTATA TTGTGAATCA
GTCATTGAGC AACAAACTGA ATTACATGTT GAAAATGCAT TAACCGATAC TCGTTGGCGC
CAAAATCCAG ATCTTGCTGT TGGTATGATT TCGTATTACG GCTTACCGCT CAATTGGCCT
AACGGCGAGG CCTTTGGCAC CATTTGTGTA CTCGACAAAA AAGCAAAAGG TTACTCAGCC
GATCTTGTTA TGCTGCTGGA GTGCTTTCGT AAAAATGTTG AAAGTAATCT AGAAATACTC
GATCAAAAGG AAAAGCTGGC ACAAGCTAAT TTACAATTAG AAACCCGTAT TGCACAGCGC
ACTTTTGAAT TAGAAAAGCT TAACAATGAT TTAATGCAAG AAATCGACTC ACGAATAGCG
GCAGAAAAAC TACTCGATAT TCAACAACGT TTCGACACTG TCACCGGATT ACCCAAATTC
AACCAGCTCG AAACGATGTT TAACCAACTA ACGACCAAAA ATGAATTTAC CAGTATTTCA
GTAGTCCATT TCAGCATCAC AAACTTAAAA GTCATTCAAG ACGGTTTAGG TTATGACATG
AGTGAAAAAG TGCGTAATTT AGTGGCTCAG AAGCTACAGC GCTTTATTAC TAATAACGCC
TACCTTGCTA CTGTCAGTGA AACCACATTC TGCATCGTTA TCTCCACCAA GAAACAGCTA
TATGCCGATA AGATGGCGGC TTTTTGCAGT CGTTTGTGTC AACATTTTGC TCAAGTTATC
CATGTTGATG ACTTCCCAGC ATCCATTACC ACCGCAATAG GCGTATCATT TTATCCTAAC
GATGGTAGTT GTTTTATGGA GCTCTCCAGA AAATCCAGCG CAGCACTTTC ACACTGTGAA
ATAAGTAATA ACAATGGCTA TAAGTTTTTT AACCCCAAAA TGGAATCCGA ACTCTCTAAT
CGTATACAAA TGGAGTCATT ATTAAGAGGT GCGCTTAGCC GCGATGAGCT GTCGTTAAAT
TACCAACCTT TTGTCGACAC CCAAAGCCAA AATGTTATTG GTGCCGAAGT ACTTATCAGG
TGGTATAACC CAACTTTAGG TCAAGTGTCA CCGGTCGACT TTATTGAAAA TGCTGAACAA
TCTGGACAGA TTATTGAAAT CGGTTATTTT GTGTTGAGAA ATGCGTTGAA ACAATTAGCT
TACTGGCGCG AATTATATAA CCGAGACTTT TACCTGGCGA TTAATATTTC TCCTGTACAG
CTCAAAGATA GTTACTTGAT AGATAAGATT GTGCAACTGC TGGAGTTATA TAAAATACCT
GGCAACTTAC TTGAAATAGA ACTAACAGAG AATGCGTTTA TACACGATGC TACACATGCC
CAAGAAATAT TAAATAAGTT ACACCATCAT GGGATCCGGT TGTCTTTAGA TGATTTTGGT
ACCGGCTATT CATCACTCAG TTATTTGCAA AACTACCCGT TTAATTCGGT TAAAATTGAT
CGCAGTTTTA TACGTAATCT TGAAACTTCA GAACAAAGCC GACAGTTAGT TAACACCATT
ATCGCCATGG CAAATAATTT ACAATTATCG TTGGTAGCAG AAGGGGTTGA AAATCAATTC
CAAGCCGATT TTGTGGCTAA ACAAGGTGCC AACATATGGC AGGGTTATCA TTTGGGGAAA
CCTGTAGATG CCAATGATTT TGCCCAGCAA TACTTAATTC CCTCAATGAC ACCTCTATTT
TAA
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| Protein sequence | MLMSWQTTVD LIAKVAKVPA SLIMKLHADE MEVFVANNNT DSPYSPGMKD KLGHGLYCES
VIEQQTELHV ENALTDTRWR QNPDLAVGMI SYYGLPLNWP NGEAFGTICV LDKKAKGYSA
DLVMLLECFR KNVESNLEIL DQKEKLAQAN LQLETRIAQR TFELEKLNND LMQEIDSRIA
AEKLLDIQQR FDTVTGLPKF NQLETMFNQL TTKNEFTSIS VVHFSITNLK VIQDGLGYDM
SEKVRNLVAQ KLQRFITNNA YLATVSETTF CIVISTKKQL YADKMAAFCS RLCQHFAQVI
HVDDFPASIT TAIGVSFYPN DGSCFMELSR KSSAALSHCE ISNNNGYKFF NPKMESELSN
RIQMESLLRG ALSRDELSLN YQPFVDTQSQ NVIGAEVLIR WYNPTLGQVS PVDFIENAEQ
SGQIIEIGYF VLRNALKQLA YWRELYNRDF YLAINISPVQ LKDSYLIDKI VQLLELYKIP
GNLLEIELTE NAFIHDATHA QEILNKLHHH GIRLSLDDFG TGYSSLSYLQ NYPFNSVKID
RSFIRNLETS EQSRQLVNTI IAMANNLQLS LVAEGVENQF QADFVAKQGA NIWQGYHLGK
PVDANDFAQQ YLIPSMTPLF
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