| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3604 |
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| Symbol | |
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| ID | 4280497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4278189 |
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| End bp | 4278734 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136416 |
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| Product | peptidyl-prolyl cis-trans isomerase, cyclophilin type |
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| Protein accession | YP_752270 |
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| Protein GI | 114564756 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000190511 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGGCTA TTCTCATTTT TGGAACATGG CCGTATATGA TTATCTTTAG CACCAACCTT
GGCGATTTTA CCGTAGAGCT TGAAATGGAA CGTGCGCCGG TTTCTTCAAA AAACTTTTTA
AAATACTGCC AAGATGGTTT TTATGAAGGC ACTATTTTTC ATCGCGTTAT TAAAGGTTTT
ATGGTGCAGG GTGGTGGCTT AACCGCCAAA ATGAAAGAAA AGCCAACCCG TGACCCGATT
GCCAATGAAG CCAATAAAGG TTTGAACAAC GTGTTAGGTA CTTTGGCGAT GGCACGTACA
GATGCGCCGC ATTCAGCTAC TGGGCAATTT TTTATTAATG TCGCCGACAA TGATTTTCTA
GACCACGCTG CAATGACTAA TGCGGGTTGG GGTTATGCAG TGTTTGCAAA AGTGACTGCC
GGTATGGATG TTATTCAGCA AATGGAGCGA GTTAAAACAA CGACGATGGC AGGCCATGAA
GATGTACCGC GTGAGCCGAT TATTGTTGAG AAAGTGACGA TTGTTGACGA GAAACCCGTC
GCTTAA
|
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| Protein sequence | MAAILIFGTW PYMIIFSTNL GDFTVELEME RAPVSSKNFL KYCQDGFYEG TIFHRVIKGF
MVQGGGLTAK MKEKPTRDPI ANEANKGLNN VLGTLAMART DAPHSATGQF FINVADNDFL
DHAAMTNAGW GYAVFAKVTA GMDVIQQMER VKTTTMAGHE DVPREPIIVE KVTIVDEKPV
A
|
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