| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3567 |
|---|
| Symbol | |
|---|
| ID | 4280460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4237065 |
|---|
| End bp | 4238339 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638136379 |
|---|
| Product | glycerophosphoryl diester phosphodiesterase |
|---|
| Protein accession | YP_752233 |
|---|
| Protein GI | 114564719 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0584] Glycerophosphoryl diester phosphodiesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.129893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGGA AAAAAAGTGT AACACTGGGT ATCATTTCGG TTTTAACCAG TATGTTATGG
ATTTCGGGGT GTAACAGTAA CGATAATAAT GACACCACTG CAGAAGTGGA TAAAAGTGTT
AGCGCCCAAG TGGGCCCGAG GCCGCTATTT TTAGTCGGTC AAATGCAAGA CAGTGAGTTA
AAAGATCAAT TAGCGCAATG TGCTTCAAAT TCATTTTACC GTACAGACTT TTCTATTGGC
CACCGCGGTG CGTCAATGCA GTTTCCTGAA CATACCAAAG AAGCCTATCA AGCAGCCATC
GATTCGGGCG CAGGTATTGT GGAATGTGAC GTGACGTTTA CCGCAGATAA AGAGTTAGTT
TGCCGTCACT CGCAGTGTGA TTTAGCCACT ACCACCAATA TTCTGGCTAT CCCAGCCCTA
GCTAATAAAT GTTCAGTGCC ATTTTCACCA GCTGATGCCG TCAATGGCGT GAGTGCAACG
GCAACCTGTT GTACCAGCGA TATTAGTCTT GCAGAGTTTA CAACCTTAAA AGGCAAAATG
GACGGCTTTA ACCCTAATGC CACTACAGTT GAAGAGTTTA TGGATGGCAC TCCAAATTGG
CGCACCGACT TATATGCAGG TAATGGCACG TTAATGACTC ACGCTGAAAG TATCGCCTTG
TTCAAAGCTG CTGGAGTAAA GATGACTCCC GAGCTTAAGT CGGCCAGTAT CAGCATGCCG
TATGATGGTT TTACTCAACA AGACTACGCC CAAAAAATGT TAGATGAATA TGCCGCAGCA
GGCGTTGATG CATCGCAAGT GTTTCCACAA TCGTTTAATT TAGACGATGT AAAATATTGG
ATAGCCAATG CGCCTGAATT TGCCGATCAA GCGGTATACC TTGACGATCG TTATGATCTG
AGTGGTTTTG ATCCACAGAA CAGTGCCACA TGGTCACCGA GTATGGACAC TCTAGCAGCA
GACGGGGTCA AGATTATTGC GCCGCCATTA TGGATGCTGG TTACTGTGGG AGACAATAAC
GCGATAGTGC CATCTGAATA TGCCAAAGCA GCAAGTGCCG CTGGGTTGAA GATGATTGCT
TGGTCATTAG AGCGGTCTGG GCCACTGAGT CAAGGCGGTG GTGGTTGGTA TTATCAGAGT
ATTGCTGACG TGATAGATAA CGAAGGTGAT ACTTTTGAGC TGTTAGATGT ACTGGCAAAA
GATGTCGGAG TAATGGGTGT GTTTTCTGAC TGGCCTGCCA CAGTGACATA TTATGCTAAC
TGTATGAATA TGTAA
|
|---|
| Protein sequence | MTRKKSVTLG IISVLTSMLW ISGCNSNDNN DTTAEVDKSV SAQVGPRPLF LVGQMQDSEL
KDQLAQCASN SFYRTDFSIG HRGASMQFPE HTKEAYQAAI DSGAGIVECD VTFTADKELV
CRHSQCDLAT TTNILAIPAL ANKCSVPFSP ADAVNGVSAT ATCCTSDISL AEFTTLKGKM
DGFNPNATTV EEFMDGTPNW RTDLYAGNGT LMTHAESIAL FKAAGVKMTP ELKSASISMP
YDGFTQQDYA QKMLDEYAAA GVDASQVFPQ SFNLDDVKYW IANAPEFADQ AVYLDDRYDL
SGFDPQNSAT WSPSMDTLAA DGVKIIAPPL WMLVTVGDNN AIVPSEYAKA ASAAGLKMIA
WSLERSGPLS QGGGGWYYQS IADVIDNEGD TFELLDVLAK DVGVMGVFSD WPATVTYYAN
CMNM
|
|---|
| |