| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3565 |
|---|
| Symbol | |
|---|
| ID | 4280458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4233543 |
|---|
| End bp | 4235594 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638136377 |
|---|
| Product | TRAP transporter, 4TM/12TM fusion protein |
|---|
| Protein accession | YP_752231 |
|---|
| Protein GI | 114564717 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
|---|
| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.274322 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATC CAACCCAAAT TAACGAACCA GAGCAAGGCT TAAGTGCCGA TACTCGCAAC
TGGCCAAAAG CCTTGTTTGC AGTAGCATTG ATTTTTTCTA TTTTCCAAAT TACCACCGCG
GCATTTCATC CAGTTTCGAC ACAAGTATTG CGCGCCGTAC ACGTGGGCTT TTTATTATTA
GTGGTGTTTA TTAGCTACCC AGGTATAGGC AAGAGTCAGC CATGGCAACC TTTGGCATGG
ATACTCGGTT TAGCGGGTAT GGCTACCGCG GTTTATCAAT GGGTGTTCGA AGCAGACTTA
ATTCAACGTT CTGGTGATTT AACCCAAAAT GACATGATTA TTGGTGTGGT GTTAGTCGCT
TTAGTGTTTG AAGCCGCAAG ACGAGTGATG GGAATAGCCC TGCCGATTAT TTGTGGTATT
TTTTTGGCCT ATGGTTTATT TGGCGAGTAT TTACCCGGTG AATTGATGCA TCGAGGTTAT
GGTTTCGATC AAATAGTTAA CCAGTTGGCC TTTGGTACCG AAGGCTTATA TGGCACGCCA
ACTTATGTAT CCGCGACCTA TATTTTCTTG TTTATTCTGT TTGGTGCCTT TTTAGAGCAA
GCAGGCATGA TCCGCTTATT TACCGACTTT GCTATGGGCT TATTTGGCCA TAAAGTGGGT
GGGCCTGCAA AAGTGTCGGT GGTGTCTTCA GCACTCATGG GCACCATTAC CGGTTCGGGA
GTTGCCAATG TGGTCACCAC CGGCCAGTTT ACTATTCCGT TAATGAAGCG CTTTGGTTAT
CGGTCTGCTT TTGCGGGTGG GGTAGAAGCC ACATCCAGTA TGGGCAGCCA AATTATGCCG
CCGATTATGG GCGCCGTGGC CTTTATTATG GCAGAAACCA TTAATGTGCA ATTTATTGAA
ATTGCTAAAG CAGCGATGAT CCCCGCGGTA TTGTATTTTT GTTCGGTGTT CTGGATGGTG
CATTTAGAAG CTAAACGCGC CAATTTATCT GGTTTACCTA AAGACCAATG TCCGGATCCG
TGGGCAGCTA TTAAGTTGCG TTGGTACTTA TTAATTCCAC TATTTATTTT GATTGGTTTG
TTATTTTCAG GTCGTACACC GCTGTTTTCT GGCATGGTTG GCTTAGCACT CACTGCGATT
GTTATTTTAG GTTCGGCCAT TATTCTCAAT CTATCATCAG CTGCTATGCG GTTTGCTTTT
TGGATAGCGC TAGGGGTGTT ATGTGCAGGA TTTTTCCAGT TAGGTATAGG GGTGATGTTT
GGCGTTATCG CTATGCTGGT GGTGATTTGT TGGTTTGTTA AAGGTGGCAA AGAAACCCTA
ACATTATGTG TGCATGCGTT AGTTGAAGGT GCGCGACATG CAGTACCTGT AGGTATTGCT
TGTGCGCTAG TGGGCGTGAT TATTGGTGTT GTGTCACTAA CCGGTATTGC TTCAACGTTT
GCCGGCTATA TTCTGGCTGT CGGCCAAGAT AACTTATTCT TGTCTTTAGT GCTGACGATG
GTGACGTGTT TGGTATTAGG TATGGGGATC CCGACAATTC CTAATTACAT TATTACCAGC
TCAATTGCCG CGCCAGCGTT ACTGGATTTA GGCGTACCGT TAATTGTGTC GCACATGTTT
GTGTTTTATT TTGGCATTAT GGCAGACCTT ACACCACCCG TTGCCCTGGC GTGTTTCGCC
GCGGCGCCAA TCGCCAAAGA GAAAGGCTTA AAAATCAGTT TATGGGCCAT TCGCATTGCC
ATTGCTGGGT TTATTATTCC GTTTATGGCG GTGTACGACC CTGCGTTAAT GCTCCAAAGT
GGTGGTGTGC TAGAAACGGT TTATGTGGTC CTTAAAGCGA CGGTTGCTAT AGGTATTTGG
GGCGTGATAT TTACCGGCTA CTTATTACAA AACCTTTATT GGTGGGAACG TGTTTTAGGC
TTTATTGCTG GTGGCAGTTT AATTATGGCG ACACCGCTAA GTGATGAGTT AGGCTTTGGT
TTGGCACTGG TGTTTATTTT GCACCACGTA TGGCGAGCAC GTAAGCTAAA ACGTTTAGCG
CAGGGCGAAT AA
|
|---|
| Protein sequence | MSDPTQINEP EQGLSADTRN WPKALFAVAL IFSIFQITTA AFHPVSTQVL RAVHVGFLLL
VVFISYPGIG KSQPWQPLAW ILGLAGMATA VYQWVFEADL IQRSGDLTQN DMIIGVVLVA
LVFEAARRVM GIALPIICGI FLAYGLFGEY LPGELMHRGY GFDQIVNQLA FGTEGLYGTP
TYVSATYIFL FILFGAFLEQ AGMIRLFTDF AMGLFGHKVG GPAKVSVVSS ALMGTITGSG
VANVVTTGQF TIPLMKRFGY RSAFAGGVEA TSSMGSQIMP PIMGAVAFIM AETINVQFIE
IAKAAMIPAV LYFCSVFWMV HLEAKRANLS GLPKDQCPDP WAAIKLRWYL LIPLFILIGL
LFSGRTPLFS GMVGLALTAI VILGSAIILN LSSAAMRFAF WIALGVLCAG FFQLGIGVMF
GVIAMLVVIC WFVKGGKETL TLCVHALVEG ARHAVPVGIA CALVGVIIGV VSLTGIASTF
AGYILAVGQD NLFLSLVLTM VTCLVLGMGI PTIPNYIITS SIAAPALLDL GVPLIVSHMF
VFYFGIMADL TPPVALACFA AAPIAKEKGL KISLWAIRIA IAGFIIPFMA VYDPALMLQS
GGVLETVYVV LKATVAIGIW GVIFTGYLLQ NLYWWERVLG FIAGGSLIMA TPLSDELGFG
LALVFILHHV WRARKLKRLA QGE
|
|---|
| |