| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3527 |
|---|
| Symbol | |
|---|
| ID | 4280420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4197456 |
|---|
| End bp | 4199201 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638136339 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_752193 |
|---|
| Protein GI | 114564679 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCTT TACAGCTAGT AAGCGAACTT GATCACATCA TAGAACAGCA ATCTATCGAC
GCTGTATTCC AGCCGATTTT TAATGTTTCA ACAAATCAAT TGCACGGTTA TGAAGCGCTC
AGTCGTGGCC CTAAAAATAG CCCGTTACAC ACGCCTTTCG CTCTATTTAC TACCGCCGAA
AAACAAAACT TATTAAGCGA ACTTGAAACC TTATGTCGCA GCATTTCAAT TAATGCATTT
CACTCTCGCC AGCTTAATGG CAAGCTATTT ATTAATATTT CACCAAAAGC ATTGCTCGAT
CCCAATCATC CAAAAGGCAT GACACTACAG CTTATTAAAC AGTTGGGGAT CAACCCGTCG
GATGTGGTTA TTGAATTGTC AGAACAATAT CCTGCCGACG ATATCGACTT GCTAAAGTCC
TGTTTAAACC ATTATCGCAA TCAAGGGTTT TTAACCGCTA TTGATGATTT AGGCGCCGGT
TATTCTGGAT TACGCTTGTG GTCTGAATTA GCACCAGATT ATGTCAAAAT CGACCGCCAT
TTTATTCATC AAATAGATAC CACCGCGGTA AAACAAGAGT TTGTCCGCTC TATTGTCGAT
TTATGCCAAA ACTTAACCTG TAAAGTGATC GCAGAAGGCA TTGAAACCAA TGAGGAACTC
ACCACTCTAA AACAATTAGG GGTAACCTAT TGCCAAGGCT ACTTTCTTGG ACGACCAGCT
CTCCATCCAA ACCAGCAATT TAGCAGTGAA CTGAGCACTC TCATAGCTCA ACCTAATTCT
CGTTATTGTG AAACAGCTGA AAGTTTATGC ACCAACGCCA TAAAAGTATC TCCTGGTACA
CAACTTAAAA AAATCAGTCA GACTTTTGCT GAACAACCAG CATTACAAGC CATTGTGGTA
ACCGAAAATA ACAAGCCATT AGGTATCGTC AATCGCAGCA CATTACTCGA GCTATTCAGT
ACACCTTATG GCCGTGCATT ACACGAAAAC CGCCCTGCGA AAATGGCAAT GGACACCAAG
GTGTTACACA TTGACGCCAA CGAACCGCTT ACCTATGTCA GTCAATTACT TACCTCAGAT
TCAGTCAACA CGGTGGCGCA ACAGTTCATT ATTTTGCGAA ATCAGCAGTT GATTGGCATT
GGCCATACTA AAGATTTATT ACAACGTATT ACTGAACATA GAATAAAAAT GGCGCGACAC
GCAAACCCTC TCACCAACTT GCCAGGAAAT GTGCCAATAC AAGAAGAGCT AAAACGCTTA
AGGCTACAAA AAAAATCTTA CTATCTTGCC TATTTAGATT TAAGCCATTT TAAACCTTAC
AACGATATTT ATGGATTTTG GCGTGGGGAT GAAGTCATTC AGTTAGTAGC AAACTTGTTG
CTGCCTTATC AAAATGAACA TTGTTTTGTT GGCCATATTG GTGGGGACGA TTTTGTTATG
ATAAGCATGC AAGACGACAC GCTAGCCAAT TGCCAAACAA TTATTGAATT ATTTGAGCAA
CAGAAAATGA GTTTTTACAA TGGCGATCAC TGGCAGGCGC AAACAATGCA AGCCCAAGAC
AGGCAAGGAC TGCAATTCCA ATACCCTTTG GTTTCATTAT CCATTGGGGT TTTACCGCCA
TTGGTGACCC AACAAGCAAC AGAATATCAA ATATCAACGT TAAGCGCCCA AGCCAAAAAG
CAGGCAAAAA TCGCTTCAAA TGGATTTTAC CTGCATGAAA AACAATCGAC ATTGCTTAGC
TTATAA
|
|---|
| Protein sequence | MTALQLVSEL DHIIEQQSID AVFQPIFNVS TNQLHGYEAL SRGPKNSPLH TPFALFTTAE
KQNLLSELET LCRSISINAF HSRQLNGKLF INISPKALLD PNHPKGMTLQ LIKQLGINPS
DVVIELSEQY PADDIDLLKS CLNHYRNQGF LTAIDDLGAG YSGLRLWSEL APDYVKIDRH
FIHQIDTTAV KQEFVRSIVD LCQNLTCKVI AEGIETNEEL TTLKQLGVTY CQGYFLGRPA
LHPNQQFSSE LSTLIAQPNS RYCETAESLC TNAIKVSPGT QLKKISQTFA EQPALQAIVV
TENNKPLGIV NRSTLLELFS TPYGRALHEN RPAKMAMDTK VLHIDANEPL TYVSQLLTSD
SVNTVAQQFI ILRNQQLIGI GHTKDLLQRI TEHRIKMARH ANPLTNLPGN VPIQEELKRL
RLQKKSYYLA YLDLSHFKPY NDIYGFWRGD EVIQLVANLL LPYQNEHCFV GHIGGDDFVM
ISMQDDTLAN CQTIIELFEQ QKMSFYNGDH WQAQTMQAQD RQGLQFQYPL VSLSIGVLPP
LVTQQATEYQ ISTLSAQAKK QAKIASNGFY LHEKQSTLLS L
|
|---|
| |