| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3521 |
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| Symbol | |
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| ID | 4280415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4192069 |
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| End bp | 4193712 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136334 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_752188 |
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| Protein GI | 114564674 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTACGGA TTTTACTAAC GTTATTATTA TTCACATCGG CAGTGTTTAC GACACTATCT
CTTCGTGCAG AACAAGATGC TGTGATACCG ATTGTTGCCA CTAGTCAGCT AACTGATACT
CAAAATCAAA TCAGCCGTTT ACAACAAACA ATCGAGCAAG ATACCAAGCT ACTATTTAAG
GCAAAAGGTG AACTGCGTAC ATTTACTGAA TATCGCATTA AAAACAAGTC GTCTGAATTA
CGCGACAAAA TTGGTCAACT TATTGCCACA CCAGACGCAG ACCAGCAATA TCTAGTCACC
TTAGTACAAA GCCAATTGGC CTTTTTAGAG AATGTCAGTG CGTACTTAGA CGCCCAAATT
ATGACCATGC GTCTTGATTT AAGTCTAGAT GATGACAGTC AAAAAATCCT AGCCATTTCA
CAACGAGAAT TTGAACGCGA CCATTATCTC AAGGCACAAT TAACCACTCT GCAGTGGGCA
GAAACACTGA ATATAGATGT GAGTGTCCAA AAGCAAAAAT TGACCGAGTT TATGCTCAAT
AGAGCGGATC AGTTTGATAG TTTAGTGCAT TACACACAAG ATGAATTACA AAAAGCCGTT
GCAGAAGCCG CTGATGCAGG TGCAGATATC ACCAGCGAAC AAAAAGCTGA TGTGGTGGCA
CTAAAAGAAC GCTTGGAGCA AAGCAGCTCT AGCTTAGCGG TTTCAGCGGG AATACTCGAA
ACATTAGGCC AGAACGTGGC ACCATTTAAA CAAACATTGT TTAGTGTTTC TGGTGATATC
ACCCAAGATG TATTGAATTT TAGCGTCGCG TCTAACCTGC TACAAGGTTG GGGTAAAGTC
ATTAAAGATC AGACGATTAA TAATGGACCC AGTTTAACCT TTAAGATTTT AGTGTTTCTA
TTCATATTAT TTGCGGCAAG TTTAGTCGCC AAAATTGTTA CACAAATTAT CTCTAAAACA
GTACGTGCAT CGAAATTACA ATTTAGCCAA CTGTTGCAAG ACTTCTTTAT CTCGTTGTCG
AGTAAAATAG TGTTTGCCCT AGGATTATTG ATTGCCTTAT CACAGCTCGG GTTTGAGCTT
GGGCCGTTAC TCGCGGGTTT TGGTATTGCG GGAGTCATTA TTGGTTTTGC ACTGCAAGAT
ACCCTGTCTA ACTTCGCTTC TGGCATGATG ATCTTAATCT ATCGTCCATT TGATGTCGGC
GACTTAATCA ATGCCGCTAA TGTTACCGGT CGCGTCAGCC ATATGAGCCT AGTATCAACA
ACAATCAAAA CGCTAGATAA CCAACGTCTT ATTGTTCCAA ACAATAAAAT CTGGGGCGAT
ACCATTAACA ACATCACCGC AGAGCATCAG CGTCGAGTAG ACATGACTTT TGGCATTAGC
TACAGCGACA ATGTTGAACA TGCAGAAACC ATATTAAAAA GTATTGTAGA ACAACACCCT
AAGGTGCAAG CGCATCCAGA ACCGATAGTG AAACTCCACA CATTGGGCGA ATCGTCAGTC
GACTTTATTG TAAGGCCTTG GGTTAAACCC GATGATTACT GGGAAGTATA CTGGGACATT
ACTCGCGCAG TGAAAATACG CTTTGATGCG GAAGGCATTA GTATTCCGTT CCCGCAACGC
GATGTACACA TATATCAAAA GTAA
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| Protein sequence | MLRILLTLLL FTSAVFTTLS LRAEQDAVIP IVATSQLTDT QNQISRLQQT IEQDTKLLFK
AKGELRTFTE YRIKNKSSEL RDKIGQLIAT PDADQQYLVT LVQSQLAFLE NVSAYLDAQI
MTMRLDLSLD DDSQKILAIS QREFERDHYL KAQLTTLQWA ETLNIDVSVQ KQKLTEFMLN
RADQFDSLVH YTQDELQKAV AEAADAGADI TSEQKADVVA LKERLEQSSS SLAVSAGILE
TLGQNVAPFK QTLFSVSGDI TQDVLNFSVA SNLLQGWGKV IKDQTINNGP SLTFKILVFL
FILFAASLVA KIVTQIISKT VRASKLQFSQ LLQDFFISLS SKIVFALGLL IALSQLGFEL
GPLLAGFGIA GVIIGFALQD TLSNFASGMM ILIYRPFDVG DLINAANVTG RVSHMSLVST
TIKTLDNQRL IVPNNKIWGD TINNITAEHQ RRVDMTFGIS YSDNVEHAET ILKSIVEQHP
KVQAHPEPIV KLHTLGESSV DFIVRPWVKP DDYWEVYWDI TRAVKIRFDA EGISIPFPQR
DVHIYQK
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