| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3512 |
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| Symbol | |
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| ID | 4280406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4185558 |
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| End bp | 4186514 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136325 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_752179 |
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| Protein GI | 114564665 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAAATG ATCAAAGTGC GATGAACGAA CTCCACTGGC TAATCGATAT GGTACAAACC
ATTGAGGTTG GTTTAGTAGT GCTCGATCGC GACTATAATA TCCAACTTTG GAACGGTTTT
ATGGAAAACC ACAGTGGTGT CTCACCCAAT TCCATTAAAG GTAGTAATCT ATTTGAAAAG
TTTCCCGACT TACCAGCCAC GTGGTTAAAA CATAAAATGG AGTCGGTTTT TTTACTTAAA
AACCGCACCT TTATTAGTTG GGAACAGCGC CCATACGTAT TCCAGTTTAA AAACTATCGC
CCGGTGACTG GCCGAGCAGA TTTTATGTAT CAAAACATTA CCTTACTGCC ATTAGCGTCA
TTAACCGGGC AAATAACTCA CATCAGCATT ATTGTCTATG ATGTGACTGA TATTGCGGTT
AATAAACTGC AACTTAAAGC CGCTAATGAG CAACTTGAAC AACTTAGTCA AACCGATGGT
CTAACCCTTT TGCATAACCG TCGTCATTGG CAAAGTTGCA TGGAAAAAGA GTTCGATCGT
TATTCTCGCT ATGGCGATGC AGCATCATTG GTGATGATTG ATATTGATAA TTTCAAGCGT
ATTAATGATG AATATGGTCA CCCTGCCGGT GATAAAGTGA TCCAACATAT TGCCTATTTG
TTAAAGCAAG CGTTGCGTGA CACTGACTGT GCTGGCCGTT ATGGCGGAGA AGAATTTGGG
GTGGTATTAT CTAAAACCAC TGCAGAAGAA GCTCTCAACT TTACCGAACG GTTAAGAAAA
CGTATTGAAG CATCGGAAGT CGCATTCGAA AACCGCCTTA TAAAAGTCAC CGTAAGCTTG
GGCATTAACG ATTTAGATTC CGAAATAGAT AATAGCTCAA CCTGGTTATC GGGTGCTGAT
AAAGCCCTAT ATGTAGCTAA GCAAGAAGGC CGTAACAAAA GCGTTATCCA TAAATAA
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| Protein sequence | MSNDQSAMNE LHWLIDMVQT IEVGLVVLDR DYNIQLWNGF MENHSGVSPN SIKGSNLFEK
FPDLPATWLK HKMESVFLLK NRTFISWEQR PYVFQFKNYR PVTGRADFMY QNITLLPLAS
LTGQITHISI IVYDVTDIAV NKLQLKAANE QLEQLSQTDG LTLLHNRRHW QSCMEKEFDR
YSRYGDAASL VMIDIDNFKR INDEYGHPAG DKVIQHIAYL LKQALRDTDC AGRYGGEEFG
VVLSKTTAEE ALNFTERLRK RIEASEVAFE NRLIKVTVSL GINDLDSEID NSSTWLSGAD
KALYVAKQEG RNKSVIHK
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