| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3502 |
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| Symbol | |
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| ID | 4280396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4167167 |
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| End bp | 4170877 |
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| Gene Length | 3711 bp |
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| Protein Length | 1236 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638136315 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_752169 |
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| Protein GI | 114564655 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCGA CTGAGCCAGA TTTACAACTA AAATCTCCTA TTCAACGTAA TTATAACCGA
GCGGTGTTCT ACACCTATAT CGGGGTAATT GTGATGGCTT TGCTGACCGC TGGCATTATG
TTTGAACGTC AAAAAGAGCA GCAAATTCAA CAACGAGAAG AACAAGTAGC TCGTCATGTT
ATGCAAATCG ACTTATTGCT TGAGTCGAGC ATTCGTGCGG TGAAAAGCTT GCGTGATGTA
GCGGTGGATC ATTTACGTTT GGGCGAGTTT GTGCGTAAAG AGCGCTTACC AGAGTATGAA
AAATTTAACG AAGATGGCCA GTATTTCACT TTAGAACCCA ATTATGCCAA CAGTGGTGTA
CCGTTTACCA ATATGGGACG CATTACTGGT GCGGGTTCAT TAGATGACCG TAGCGAGAGC
TTTTATCAAG AGCTTGAAAT GCTGTTTGAG CTATCATTAT CCTTTCCTGT CGCGAAAGAA
GCTGCCCCTA AAGCTTCGTC GATCTATTAT ATTTCTAACC GTCGGATGAT GTCATTTTAT
CCATGGGAAA ATAATGATTT ACGCTTTAGA GATGAGCTGC TCAATAAGAA ACAATTTCAA
TTATCAACGC CTTCAATGAA TCCACAACGT AGTGTTTTTT GGAGTGAGGC GTACATCGAT
TCGGCGCATC AAGGCCTTAT TACTACGCTT GGTTTACCGG TATATCTAGA AGATGAGTTT
ATCGGTTCGA TTAACCTCGA CATGACGTTA TCATCGCTGG ATAAACAAAT TCGTACCTAT
TTTAAAATGC CCGGTACGGT GATCTTGCTT GACCAGCAAA ATAATATTTT ATCTCACAGT
GATTTTGACT CCAGTGAAAT GAATAAGGTT TACCACATTA GCCAGCGAAT TCCGGCAGAG
TTACATTCGT TATCGGAGTC TGAGCTATTT GACGCCCATG AAGGCATTTT GCGAAATGGA
TATTACATTC ATAGTGTGGC ATTGCATAAC GCGCCTTGGC GGTTACTGTA TTTACAAGAT
GAAGATGATT TATTCAAAGA TTCGTGGGAC AAGCTACAAC TGAGTTTTCT ATTAGTGGTA
TTGGCCTTGT CACTGCTGGT TACCATTGTG CATTGGCAAA CTCGCCGAGC ATTCGTTAGC
CCAGCTTCAC GCTTATTAAC CCATCTAGAA GCGTGTTCAC AAACGCCTAT CCGTCCGCCA
GAGAAAATTA CCCGTGGTTG GGAACCGTGG TTTGCGCTAG TGAGTCGTAT TTTTGAAGAA
AACCGCCAGT ATACTCATCA TCTCGCCGAA CAAAATAAAC GTCTTGATAA CTTAGTTGCT
AGGCGTACTC AGCGTTTACG TGAAACAACT GAGCGCCGTG AGCGCGAGTT TGCATTGCTA
CGATCATTGA TCGATTCGAT CCCTGAAGCG ATCGTGTTTA AAGACAAAGA AGGCAAATAC
TTAGGCTGTA ATAAGTCAGC TGAAAGAATG CTGGGCTATA CCGAAAATGA AATTATTGGC
TTAACGTCAT CAGAAGTGGT GAGCCCAGAG CAAGGCTTGC GCATTGGGGA AGAAGACAAC
AAAGTTCTGA CCCAGCAGCA TTCATTACGT TACCAAGAAC GAGTCAATAT TGAAGGTAAA
CCGGTATTGC TCGATACCTT TAAATTGCCG TTTTACAATC GCCGTGGCGA TCTATTAGGT
TTGATTTCTG TTTGGCGTGA TATTACCCGT GAATACGAAG CCGCTGAGCA ATTACGCATG
TCTGAGCAAC GTTACCATCT TGCTATGGAT GCGGTAGAAG ATGGTTTGTG GGATTGGTAC
ATTGATTCTG AACAGATTAT TTGTAATCCG GCTTTCTATT CAATGTTGGG TTATCAAGCT
AATGAGTTTC CACCGTTACT CGAATCAATA GATGAGTTAT ATCATCCTGA CGATCGTGAA
CGAGTACAAG AGTACCGCGC TCAATATGTG CGCGATCCGG TTGGCACTTA TGAAATCGAA
TTTAGAATGC GCGGTAAAAA TGGCCTGTAT TTCTGGGTGT TATCTCGTGG GCGAGCGGTT
GAGTTTTCTG AGGATGGTTG TAGTAAGCGA ATGCTCGGTA CACATAAAGA CATTACCCGT
CAGAAGAGTA ACGAAGTCGC CTTGCTTGAA GCAAAACAAG ACGCCGAGTT AGCCAACATG
TACAAAAGTG AATTTTTGGC CAACATGAGT CATGAAATTC GGACACCAAT GAATGCGATT
ATTGGTATGT TGCAGTTAGC ACAACGCACT AGCTTGACTG TGCAACAGCA AGATTATCTT
AATAAAGCCG GTTTTTCTGC CCAATCGTTG CTGCGAATTA TTAATGACAT TCTAGATTTT
TCTAAAATTG AAGCAGGCAA ATTAGAGTTA GAAAGAGTCG CGTTCCCGCT GGATAAAGTG
CTTGATCATG TTATTGATAT TAATGCCATT AAAGCGCAAG AAAAAGGCGT CGAATTACTG
CTGTATGCGC CAGTCACCGC AGGGCTTATT TTGTATGGCG ATCCACTGCG TTTAGGCCAA
GTCATCGTTA ATTTATTGTC TAATGCGGTC AAATTTACCC AAACTGGTGA AGTTGAGCTG
GGTTGCGAAG ATGTGGGTGA GCGTGACGAC CGTATCACCA TGAAATTCTG GGTACGCGAT
ACCGGTATTG GGATCAGTAA AGACCAACAA GCAATGCTGT TTGATGCATT TTCACAAGCT
GATGGTTCAA CTACACGTAA ATATGGCGGC ACGGGTTTAG GTTTATCTAT CAGTAAACAT
TTAGTGTCGA TGATGGGTGG AACCATGCAA GTTGAGTCCG AACTGGGCTC CGGCAGCATT
TTCAGTTTTA CCATTAGCTT TGAAATTGCC GAAGAACAAG TGATCGCGCC GCTGGTGGTG
CCAGAACAAT TAAATAACCT AACAACGCTG GTGGTTGACG ACAACCCAAG TGCATTACAA
ATTTATTCGA CATTGATGAC CGATTTTAGC TTTGGTGTGA ACACGGCAGA CAGTGGTCAA
AAAGCACTGG ATATATTGCG TAAAAAGCCA GTCGACTTAT TGTTGTTAGA TTGGATGATG
CCAGAAATGA ACGGCTGTGA TGTTATTAAG GCGATAGATG AAATGGTCGC TGATGGTAGC
ATAGCAAAGC GTCCTATTAT TATCTTAATG ACCGCTTATG CTGCTGAGCC GTTAGACCAT
GAGCTGCAAA AAAATTCTGT TTATGCGGTA TTACAAAAGC CGTTTAAGGC CTCGGCGTTA
TTTGATGAAA TTATTAATGC CTTTGCCAAA GAACCTAAGC TGAATGCAAT GCCGGTTATT
ATTGAAGCCG AACCCGCCAA AGCATCTGGT TTAGTATTGT TGGTTGAAGA TAACTTTATT
AACCAACAAG TGGCGTCTGA ATTACTGAAA AGTGCCGGTT ATGAAGTAGT GATAGCCGAC
AACGGTCAAG TTGCATTAGA TGTGATTGAT TCTAAACCAT TTGATGCAGT GTTAATGGAC
ATTCAAATGC CGGTAATGGA TGGATTAACT GCTACCGCCG AATTACGCAA ACGTTATAGC
AAACAACAAA TGCCTATTAT CGCCATGACT GCGCACGCAA TGTCGGGTGA TAAAGAAAAA
AGTTTAGCTG CAGGCATGAA TGCACATATC ACTAAGCCAA TTGTGCTTAC TGAATTATTT
GAAACCTTAT CTCATTGGAT TGCATATAAA CATAATCATA AAGACGATTA G
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| Protein sequence | MKPTEPDLQL KSPIQRNYNR AVFYTYIGVI VMALLTAGIM FERQKEQQIQ QREEQVARHV
MQIDLLLESS IRAVKSLRDV AVDHLRLGEF VRKERLPEYE KFNEDGQYFT LEPNYANSGV
PFTNMGRITG AGSLDDRSES FYQELEMLFE LSLSFPVAKE AAPKASSIYY ISNRRMMSFY
PWENNDLRFR DELLNKKQFQ LSTPSMNPQR SVFWSEAYID SAHQGLITTL GLPVYLEDEF
IGSINLDMTL SSLDKQIRTY FKMPGTVILL DQQNNILSHS DFDSSEMNKV YHISQRIPAE
LHSLSESELF DAHEGILRNG YYIHSVALHN APWRLLYLQD EDDLFKDSWD KLQLSFLLVV
LALSLLVTIV HWQTRRAFVS PASRLLTHLE ACSQTPIRPP EKITRGWEPW FALVSRIFEE
NRQYTHHLAE QNKRLDNLVA RRTQRLRETT ERREREFALL RSLIDSIPEA IVFKDKEGKY
LGCNKSAERM LGYTENEIIG LTSSEVVSPE QGLRIGEEDN KVLTQQHSLR YQERVNIEGK
PVLLDTFKLP FYNRRGDLLG LISVWRDITR EYEAAEQLRM SEQRYHLAMD AVEDGLWDWY
IDSEQIICNP AFYSMLGYQA NEFPPLLESI DELYHPDDRE RVQEYRAQYV RDPVGTYEIE
FRMRGKNGLY FWVLSRGRAV EFSEDGCSKR MLGTHKDITR QKSNEVALLE AKQDAELANM
YKSEFLANMS HEIRTPMNAI IGMLQLAQRT SLTVQQQDYL NKAGFSAQSL LRIINDILDF
SKIEAGKLEL ERVAFPLDKV LDHVIDINAI KAQEKGVELL LYAPVTAGLI LYGDPLRLGQ
VIVNLLSNAV KFTQTGEVEL GCEDVGERDD RITMKFWVRD TGIGISKDQQ AMLFDAFSQA
DGSTTRKYGG TGLGLSISKH LVSMMGGTMQ VESELGSGSI FSFTISFEIA EEQVIAPLVV
PEQLNNLTTL VVDDNPSALQ IYSTLMTDFS FGVNTADSGQ KALDILRKKP VDLLLLDWMM
PEMNGCDVIK AIDEMVADGS IAKRPIIILM TAYAAEPLDH ELQKNSVYAV LQKPFKASAL
FDEIINAFAK EPKLNAMPVI IEAEPAKASG LVLLVEDNFI NQQVASELLK SAGYEVVIAD
NGQVALDVID SKPFDAVLMD IQMPVMDGLT ATAELRKRYS KQQMPIIAMT AHAMSGDKEK
SLAAGMNAHI TKPIVLTELF ETLSHWIAYK HNHKDD
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