| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3457 |
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| Symbol | |
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| ID | 4280354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4110210 |
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| End bp | 4113326 |
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| Gene Length | 3117 bp |
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| Protein Length | 1038 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136273 |
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| Product | heavy metal efflux pump, CzcA family protein |
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| Protein accession | YP_752127 |
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| Protein GI | 114564613 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.230333 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGATA AACTCATTCA ATTTTCCATA ACCCGCCGGT GGTTGGTTAT GTTTTTTGTT
TTGCTAACGG GTGCACTAGG CGTTTGGAAT TATCAACATC TTCCTATTGA TGCTGTACCT
GATATTACCA ATGTTCAAGT TCAAATTAAC ACAGAAGCAC CTGGGTATTC ACCACTAGAA
GTTGAGCAGC GAGTCACCTA TTTGGTTGAA ATGTCAATTG CAGGTTTACC TTATGTTGAG
AGTACTAGAT CGCTATCTCG TTACGCACTC TCACAAGTTA CTGTTGTGTT TGAGAAAGGA
ACTGATATTT ATTTTGCTCG GAATCTTATT AACGAACGTT TGCAACAAGC TAAAAGTGAG
ATGCCGTCAG GTATTGAGCC CGTAATGGGA CCTGTTGCAA CTGGATTAGG TGAAATCTTT
CACTATTCAG TTCATGCAGC GCCAGGGGCT TTGCAAGCAG ATGGACAACC TTACGATGCA
ACAGCTTTGC GTACATTGCA AGATTGGGTT ATTCGTCCTC AATTGCGTTT GGTTGAGGGG
GTTACTGAAG TAAATACAAT CGGAGGGTAT GAAAAGGAGT TTCATATTAC ACCAGAACCT
TCAAAGCTAT TGGCTTACCA AATTAGTTTT GATGATTTAG TCGCTGCGTT GCAGAAAAAT
AATTCGAATG TAGGTGCTGG GTATATAGAG AAAAATGGTG AACAATATTT GATCCGTGCT
CCAGGTCAGG TTACTGATAT TTCATCGATT AAGCAGATCA TTGTTGCTCG TAGGGATGGA
ATTCCTATTA CCGTAGGTGA TGTTGCAGAG ATTGGGTTTG GTAAACAGCT TAGAACTGGT
GCTGCAACTC GCGATGGCGA AGAAACTGTG TTGGGCACAG CTGTTATGTT GCTTGGCGGA
AATAGTAGAA CTGTTTCTCA GGCAGTATCA GCAAAATTGC TTGAGATTAA TAAAACTCTT
CCAGAAGGTG TGATTGCTGA ACCAGTTTAC GATCGTACTG TATTGGTAGA TAAGACGATT
GCAACAGTTC AGACCAATTT AGCTGAAGGT GCTGTGTTGG TCATTGTCGT TCTTCTCGTT
ATGCTGGGTA ATGTTAGGGC TGCTTTATTA ACTGCCATGG TGATCCCTTT ATCGATGTTG
ATGTTGATGA CTGGCATGGT AGAAACCAAA GTAAGCGCAA ATCTCATGAG TCTAGGTGCA
CTTGATTTTG GGTTAATTGT TGACGGTGCT GTAATCATAG TTGAGAACTG TATTTTAAGG
CTGGCAGGAA GACAGCATCA CCTGGGGCGA ATATTGACAT TGGATGAACG TTTTCAGACC
GTCTTTACGG CTACCCGTGA AGTGTTTACT CCAAGTCTGA TAAGTGTTTT AGTTGTTATT
ATGGTCAATT TGCCAATTTT GGCGCTGACA GGTGTCGAAG GTAAAATGTT TACTCCAATG
GCAATGGCCG TAATCATGGC TTTATTGTCT GCACTTGTAT TGTCTCTCAC TTTTGTTCCT
GCGGCAGTCG CTTTGTTTAT GACAGGCCAC ATAGAAGAAA AAGACAACTT TATCGTCAGT
CAATCTAAAC GATTATATCT GCCAATTTTG TCGATTGTGT TGAGATTCCG AGTACTTGTA
ATTTCAATAG CATTGATATT TGTGATTTTA GTCGGATTTG TTGCAACAAA AATGGGAACC
GAGTTTGTTC CTAATCTTGA TGAGGGCGAT ATTGCGATCC AAGCACTTCG AATTCCAGGG
ACCAGTTTAA CTCAATCATT AGATATGCAG TTTAAGTTGG AGAAGGCAAT TCTAGAGATT
CCGGAGGTTA AAACTTATTT CTCGAGAGTT GGTACTGCAG AGGTTGCGAG TGATCCTATG
GGGCCAAATA TATCTGATGG TTATGTGATG CTTAAGGATC ATAGTGAGTG GCCAAATCCT
GAAAAGACTA AGGCTCAACT TTTAGAAGAA ATAAGTGAAA AACTAGCCTT ACTACCAGGT
AATGCTTTCG AAATAAGCCA ACCTATTCAA CTTCGGTTTA ACGAATTGAT TTCAGGTGTC
AGATCTGATT TAGGTATAAA AATTTTTGGA GATGATTTAT CTAAATTACT GAGTTCAGGT
GCTGAAATAG CAAAAGTGTT AAGTAGTATT GAAGGGGCTG AAGGCGTAAA AGTAGAGCAA
GTTTCTGGAT TACCCATCTT ATCAATTGAT GCTGACAGAG CTGCTATGTA CCGTTTAGGC
TTAAACGTCT CGGATGTCCA AGATGTAGTT GCTGCTGCAA CGGGAGGTGA GAGTGCTGGC
TTGATTTTTG ATGGTGATCA ACGTTTATCA ATCGTTGTAA GGGTTGATGA GAGGGTTCGA
GGAAATTTAG AAGCGTTAGA GCGTTTACCT ATTCCGTTAC CTGAAGGTGG TTATGTACCA
TTAAGAGAAG TCGCTAAACT TACTTTAGCA CCTGGCCCTA ATCAGATTTC ACGTGAAAAT
GGAAAACGAA GATTGGTCGT TAGCGCGAAC GTCCGTGGTA GAGATCTAGG CGGATTTGTT
GCAGAAGTAC AAAGTAAGGT TGCTGAGCAA GTCAAATTAT CTCCAGGATA TTGGTTAGAA
TACGGTGGTA CTTTTGAGCA ATTACAATCT GCTTCTGATC GTTTAACTAT ACTTGTGCCT
ATAACATTGA TAATGATATT TGCTCTTTTA ATGATGACAT TTGGCTCAGC AAAAGACGCA
GCTTTAGTCT TTAGTGGAGT ACCACTAGCC CTTACTGGAG GCGTCATAGC TTTATGGTTG
CGTGATATCC CTCTATCTAT TACAGCTGGT GTAGGTTTTA TTACTTTGTG CGGCGTTTCT
GTTTTGACGG GGGTTATGAT GGTATCTGCA TTTAAAGATG AACTGGATCG TGGAAGTCCT
ATCGATCAAG CTATTCAAAC TGGTGCAATG TTGCGATTAA GACCAATTAT GATGGTTGCA
CTTGTTGCAG CATTAGGGTT TTTACCAATG GCGCTTAATA CTAGCACTGG TGCAGAAGTC
CAGAGACCAC TAGCTACAGT CGTTATTGGT GGGATCATTT CATCAACATT ACTCACTTTA
TTAGTATTAC CTGGCTTGTA CAGACTTACT TGGCGAAAGA CGAAACAGCT AAAATAG
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| Protein sequence | MIDKLIQFSI TRRWLVMFFV LLTGALGVWN YQHLPIDAVP DITNVQVQIN TEAPGYSPLE
VEQRVTYLVE MSIAGLPYVE STRSLSRYAL SQVTVVFEKG TDIYFARNLI NERLQQAKSE
MPSGIEPVMG PVATGLGEIF HYSVHAAPGA LQADGQPYDA TALRTLQDWV IRPQLRLVEG
VTEVNTIGGY EKEFHITPEP SKLLAYQISF DDLVAALQKN NSNVGAGYIE KNGEQYLIRA
PGQVTDISSI KQIIVARRDG IPITVGDVAE IGFGKQLRTG AATRDGEETV LGTAVMLLGG
NSRTVSQAVS AKLLEINKTL PEGVIAEPVY DRTVLVDKTI ATVQTNLAEG AVLVIVVLLV
MLGNVRAALL TAMVIPLSML MLMTGMVETK VSANLMSLGA LDFGLIVDGA VIIVENCILR
LAGRQHHLGR ILTLDERFQT VFTATREVFT PSLISVLVVI MVNLPILALT GVEGKMFTPM
AMAVIMALLS ALVLSLTFVP AAVALFMTGH IEEKDNFIVS QSKRLYLPIL SIVLRFRVLV
ISIALIFVIL VGFVATKMGT EFVPNLDEGD IAIQALRIPG TSLTQSLDMQ FKLEKAILEI
PEVKTYFSRV GTAEVASDPM GPNISDGYVM LKDHSEWPNP EKTKAQLLEE ISEKLALLPG
NAFEISQPIQ LRFNELISGV RSDLGIKIFG DDLSKLLSSG AEIAKVLSSI EGAEGVKVEQ
VSGLPILSID ADRAAMYRLG LNVSDVQDVV AAATGGESAG LIFDGDQRLS IVVRVDERVR
GNLEALERLP IPLPEGGYVP LREVAKLTLA PGPNQISREN GKRRLVVSAN VRGRDLGGFV
AEVQSKVAEQ VKLSPGYWLE YGGTFEQLQS ASDRLTILVP ITLIMIFALL MMTFGSAKDA
ALVFSGVPLA LTGGVIALWL RDIPLSITAG VGFITLCGVS VLTGVMMVSA FKDELDRGSP
IDQAIQTGAM LRLRPIMMVA LVAALGFLPM ALNTSTGAEV QRPLATVVIG GIISSTLLTL
LVLPGLYRLT WRKTKQLK
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