| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3407 |
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| Symbol | |
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| ID | 4280309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4056706 |
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| End bp | 4057980 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136228 |
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| Product | ribokinase |
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| Protein accession | YP_752082 |
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| Protein GI | 114564568 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG0524] Sugar kinases, ribokinase family
[COG1349] Transcriptional regulators of sugar metabolism |
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| TIGRFAM ID | [TIGR02152] ribokinase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTAAGCT CTTGTCTTTA TCACAACTTA TTTTCTGCAA AAGCACTATA TTTCATTATG
AAAAAACTAA GTCGAAATGA AAGACTGGCT GTTATTCTCA AGTTGCTTAA CATGCATAAA
GAACTGTCTA ACCAAAAAAT ATCCACATTA CTGGCGGTAA CCGCTAAAAC GGTTCGTTGT
GATCTCGTTC AACTGGAAAA AGACGGCCTG GTAAAACGAG TTCATGGCGG AGTCAGTCAG
TCTGAAGGGG TGGATATCAA AAAGTATAGC TTGGATGCCA TGCTGGCAGA ATTACTCGAC
CGCAGCATAC TGAACGACAG CATGGCACTC GACTCAAACC AAGGTAGATT AATCAAAATG
AAACATAATG TATTTGTACT TGGCTCATTC AATGTCGATA TTGTTGCGAA TCTAGCACGT
TTCCCCCAAC CAGGTGAGAC CTTGCATTCA AGTAGCAGCA GTATTGGCGC TGGCGGCAAA
GGGGCAAACC AAGCTTATGC TGCGGCTAAA AATGGTGCCA ATGTTAGCTT CATGACTAAA
ATTGGTACTG ATCAATTTAG CCAATTTGCG CGCCAACATC TCAGCAGTAC CGGCATAGAC
AATACGATTA TCCTCGAGTC CTCAACTAGC CCGACTGGTA CCGCGCTGAT TTATGTTAGT
GAACAAGCTG GCGAGAATAT GATTGCGGTC AACGAAGGCG CAAACATGAC GCTGACCGAT
GATGAAATAC ACTCAGCCAA ACAGCATATT ATTAATGCAC AACTGTTTTT AACCCAACTT
GAAACCAACT TTGATGCTAT CAAGCTCGCG ATGAGCATTG CCAAAGACAA CGGTGCTAAA
GTAATCCTCA ATCCGGCGCC ATATCATCAA AGAACTCTCG AGTTATTACC TTTAGTTGAT
ATGATCACTC CTAATGAAAC AGAAGCTTCG TTAATGACTG GGATCGAAGT AACCGATCTA
GACAGTGCTA AGCAGGCCGC TATTGCAATA CATGCCTTAG GCGTAACGTC GGTGGTGATT
ACTCGCGGAT CTGATGGGGT ATTACTTTAT GAAAACGATC AATTTACCCT AATCGAGGTG
TTAAAAAGCG CGGTTGTAGA TACCACTGGT GCAGGCGATG CTTTTAATGG CGCTTTGGTC
GCCGAGCTTG CTAGAGGCAG TACACTGCAT CAGGCCGCTA AATATGCCAA CGCTTATGCG
TCACTCGCTG TTGAGCGCCT AGGCGCAGCA AACATGCCAG ATGGCTCACT TGTCGCAGCT
AGACTTAATG CTTAA
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| Protein sequence | MLSSCLYHNL FSAKALYFIM KKLSRNERLA VILKLLNMHK ELSNQKISTL LAVTAKTVRC
DLVQLEKDGL VKRVHGGVSQ SEGVDIKKYS LDAMLAELLD RSILNDSMAL DSNQGRLIKM
KHNVFVLGSF NVDIVANLAR FPQPGETLHS SSSSIGAGGK GANQAYAAAK NGANVSFMTK
IGTDQFSQFA RQHLSSTGID NTIILESSTS PTGTALIYVS EQAGENMIAV NEGANMTLTD
DEIHSAKQHI INAQLFLTQL ETNFDAIKLA MSIAKDNGAK VILNPAPYHQ RTLELLPLVD
MITPNETEAS LMTGIEVTDL DSAKQAAIAI HALGVTSVVI TRGSDGVLLY ENDQFTLIEV
LKSAVVDTTG AGDAFNGALV AELARGSTLH QAAKYANAYA SLAVERLGAA NMPDGSLVAA
RLNA
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