| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3406 |
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| Symbol | |
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| ID | 4280308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4055318 |
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| End bp | 4056151 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638136227 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_752081 |
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| Protein GI | 114564567 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGAAC CCAGTTTAGA TCAAGAGCTC CAACAACTGC AAAATGTCTA TAGCGTCATC
ACTGAGTTTG TTGTTGAGTA CAGCTTTCAA ATTGCTGGTG CGATTATTAT TTTCTTATTG
GGGCTTTGGG TGGCAAACAA AGCGGCCAAT GTTGTCGCTG CTCAACTGAA AAAACATAAC
ATTGATATCA CCCTCAGTAA CTTTGCTTCC AACTTAGTTA AAATCATCAT TATTGTGATG
GTTGCCGTTA TCTGTTTAGG CAAACTAGGG ATTAGCGTAA CGCCAATGGT GGCTGCTATT
GGTGCCGCTT CACTTGGAGC TGGCTTGGCA TTACAAGGAA TGTTATCTAA TTACGCAGCC
GGCATTACCA TTATTGTCAC CCGCCCTTTT GTGGTTGGAA ATACCATTGA AATTAAAGGT
GTCGGCGGTG TGGTTGAAAT AATTAAACTG GGCCAAACCA TATTAACTAA TGAAGAAGGC
GAACAAATTA GTATTCCCAA TAAGCACATT GTCGGCGAAA TTTTACATAA CTCATTTGCT
TATAAATTGG TTGAAAACAA AATAAATATT GATTACCACG CTGATGCCGA TCATGTTATC
CAATTAATTA ATGACGTACT TGCCGCTGCT CCGGCAATTT ATCAAGACAA AAAACCATTA
GTCGGCATCA ATGGATTTAA TACTGTGGGT ATAGAGATTG GCGTACGTTA CTGGGTTCCG
ACAACACGCT ATTTCGAAGA GAAGTACCAC ACTAACCTCG CCATAATCAA AGCACTCAAT
CAAGCCAAAA TTAAGATACC TTGCCCGGTA AAGGAAATAC ATTTACAGCA CTAG
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| Protein sequence | MNEPSLDQEL QQLQNVYSVI TEFVVEYSFQ IAGAIIIFLL GLWVANKAAN VVAAQLKKHN
IDITLSNFAS NLVKIIIIVM VAVICLGKLG ISVTPMVAAI GAASLGAGLA LQGMLSNYAA
GITIIVTRPF VVGNTIEIKG VGGVVEIIKL GQTILTNEEG EQISIPNKHI VGEILHNSFA
YKLVENKINI DYHADADHVI QLINDVLAAA PAIYQDKKPL VGINGFNTVG IEIGVRYWVP
TTRYFEEKYH TNLAIIKALN QAKIKIPCPV KEIHLQH
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