| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3405 |
|---|
| Symbol | |
|---|
| ID | 4280307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4053784 |
|---|
| End bp | 4054959 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638136226 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_752080 |
|---|
| Protein GI | 114564566 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAT TTCAATCGAT TGATGTTGCA GATTATTATG ACAAGGACAC GTTTGACCGC
ATTGAGGCAT TTGCTAAAGA TAAGCCAACG CCATTTGTAG TTATTGACAC CCAAATCGTT
GCGAAACAAT ACGATGATAT GGTTAACAAT TTTCCTTTCG CAAATATTTA TTATGCGGTT
AAGGCAAATC CGGCCAAAGA AATTTTAACC TTGTTGCGAG ATAAAGGTTC AAACTTTGAC
ATCGCATCCA TTTACGAACT TGAAATGGTA ACGTCGATAG GTGTTTCTGC AGACCGTATT
AGCTACGGTA ACACCATTAA GAAGCGTGTC GATGTACGAT CATTCTTTGA ACAAGGCGTA
CGTATGTTTG CTTCAGACTC TGAAGCCGAT TTACGCATGA TTGCTGAAGA AGCTCCTGGT
TCAAAAGTGT ACTTGCGTAT TTTAACTGAA GGTACACACA CAGCTGACTG GCCTTTGTCA
CGTAAGTTTG GTTGCCAAAA TGAAATGGCG TACGACTTAT TAGTATTGGC AAAAGAGTTA
GGCTTGCAAC CGCATGGCAT TTCTTTTCAC GTGGGTTCGC AACAACGTGA TATCGGTGCT
TGGGATTCTG CTATCGGTAA AGTGAAAAGT ATTTACGACC GTTTAAAAGA AGAACACGGC
ATCGTACTAA AGATGATCAA TTTAGGGGGT GGTTTTCCTG CCAACTATAT GGACAAAACG
AACGAGCTAG GTGTTTATGC TCAGCAGATT AAGCATTTCC TAGAAGAAGA CTTTGGTGAT
GAATTACCAG AGATTATTCT AGAGCCTGGT CGTTCTTTGC TTTCAAATGC TGGTGTATTA
GTATCTGAAG TGGTATTGAT TTCTCGTAAG TCGAACACTG CATTAGAGCG CTGGGTATTT
ACAGATGTGG GTAAGTTCTC TGGTTTAATT GAAACCATGG ACGAAGCGAT TAAATTCCCA
ATCTATACTG AGCGTAAAGG CGAGTTAGAC AAGTGTGTCA TTGCCGGTCC AACCTGTGAC
AGTGCAGATA TTATGTATGA GCACTATAGC TATGGTTTAC CGGTTGATTT AGCCATTGGT
GACCGCATGT ACTGGTTAAC CGCTGGTGCT TACACCACGA CCTATTCAGC AGTATGTTTT
AACGGCTTCC CACCACTTAA AGATTATTAC CTTTAA
|
|---|
| Protein sequence | MSQFQSIDVA DYYDKDTFDR IEAFAKDKPT PFVVIDTQIV AKQYDDMVNN FPFANIYYAV
KANPAKEILT LLRDKGSNFD IASIYELEMV TSIGVSADRI SYGNTIKKRV DVRSFFEQGV
RMFASDSEAD LRMIAEEAPG SKVYLRILTE GTHTADWPLS RKFGCQNEMA YDLLVLAKEL
GLQPHGISFH VGSQQRDIGA WDSAIGKVKS IYDRLKEEHG IVLKMINLGG GFPANYMDKT
NELGVYAQQI KHFLEEDFGD ELPEIILEPG RSLLSNAGVL VSEVVLISRK SNTALERWVF
TDVGKFSGLI ETMDEAIKFP IYTERKGELD KCVIAGPTCD SADIMYEHYS YGLPVDLAIG
DRMYWLTAGA YTTTYSAVCF NGFPPLKDYY L
|
|---|
| |