Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3402 |
Symbol | |
ID | 4280304 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4051361 |
End bp | 4052113 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638136223 |
Product | hypothetical protein |
Protein accession | YP_752077 |
Protein GI | 114564563 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3248] Nucleoside-binding outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA TCTGCCTTTT AGCCACACTT GTACTCTCAC AAAATGTTTT TGCTGACGAT ATAGTCCAAT GGTGGGATGT TAGCGCAACT GTCTTGCATG GCGAAAACTA TGACTTAGCA CCATCAGAAA GACAAACTAC CATCACCTTA GAAACAGCCG GTGGTTGGAA GTATGGTGAT TGGTTTGCAT TCCAGGATTT TATTAATTTC AATGGTAATA ATAACGGTGT TGATAGCACG ACTTATGGCG AAATATCTCC GCGCTTTAGT GCTAGCAAAA TATTGGGCCA ACAAGTGAGC TTTGGTGCGA TAAAAGATGT CTCTTTAGCG TTAACTTACG AAGAAGGCGA AGGCCCAGTT AACAGCATGC TTTATGGTAT TGGTGTGGAC CTTGACGTGC CATTTTTTAG CTACTTACAA CTGAACACTT ACCGTCGTGA TGCAATAAGC AGTGGTAATA TCAGTGATGG TTGGCAGTTT ACGCCAGTAT TTAGAATCGA CATGCCAGTG GGCAATGCCA ATATTATTTT TGATGGTTTT ATTGATTGGG TATTCTCTGC CGACAACAAC GGCTACGACG AAAACCTGCA CATCAATCCA CAAATAAAGT ATGACTTAGG TAAAACATTG TTTGGTGATC ACAAACAAAA CAAACTGTTA GTGGGTTTTG AATATGATTA CTGGCAAAGT AAATACGGTG TTGCGGGTAT CGACCAAAAT ACCTATTCAA TTATTGCGCA GTATCATTTC TAA
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Protein sequence | MKKICLLATL VLSQNVFADD IVQWWDVSAT VLHGENYDLA PSERQTTITL ETAGGWKYGD WFAFQDFINF NGNNNGVDST TYGEISPRFS ASKILGQQVS FGAIKDVSLA LTYEEGEGPV NSMLYGIGVD LDVPFFSYLQ LNTYRRDAIS SGNISDGWQF TPVFRIDMPV GNANIIFDGF IDWVFSADNN GYDENLHINP QIKYDLGKTL FGDHKQNKLL VGFEYDYWQS KYGVAGIDQN TYSIIAQYHF
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