| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3387 |
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| Symbol | |
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| ID | 4280289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4034766 |
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| End bp | 4036094 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638136208 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_752062 |
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| Protein GI | 114564548 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGTTAT CTAAGCGCCT AAAACTCACC GCTATACTGT GTTCACTGCT TACATTGATT
GTCGGCTTGT CATTGATACA AGTTCACTAT TATCAACAAC AAATATACCG CCAACTCAAT
TACTCAATGA AGTTACAAAT CAGCATTGAT AGTTTACGTA GTCAACTGTG GCTTTACCAA
GAGTATACAG ACGACCAAGG GTTATCTGAG TTAAATACAC GCCAAGCTGA GCTGGCTAAA
AACCTCTCAG AAGACATTCA ATGGGCTACG CAACAAAAAC TCATTATTGG AAACCTGAAT
AGACTGAATA CCAATATTAG AGCACTTATT AATACTCAAA ATAGCTTCCA TAGTAAACAA
GTAGATGTGT CATCAACCCT CACTGCTGAA CGATTATTTA AAGCAAAATA CAGCATGGTT
ATTGAAGAAA TGACCGAAGA AATGTTTAAT CTTCATCAAT TATCGATTAA ACAAGCGAAA
CAAAAACAAC AAACGTTATT ATTTCTTGTG GGAGTGGTGC TATTAATATT AGCGATTATG
GTTACCGCAT GGTCTTTTAT GACGCTCATT CGTTTTAAGA AAGGGTTAGC CTCACTCAAC
CAAGGCATGG AAGCACTTGC TGCTGGAGAC CTAAAGAGTC AAATTAATTT CAGTGATACC
GATGAGTTAT CTGCGCTCGC CCAAAACTTC AATAGAATGA AACTATCACT TGCTCAAATT
ACCGTTAAAA AGGATGAATT AAAGCAAGAA GTAGACAGCC AAACCCGCAA ATTAATTGAA
CAACAAGACC AACTCATTTT CTTAGCTGAA CATGATGAAT TAACCGGTAT TTATAACCGT
CGCGCATTCA TAAAACAAAT TGATACTGCT ATAGCAAGGG ATTTACGTGG AGATAATCAA
GCAGCACTAT TATTTATTGA CCTTAATAAA TTTAAAAATA TTAACGACAC TCTTGGCCAT
AGCATTGGTG ATGAAGTGAT CATGACCATT GCAAAACGTT TGGTTAACAG TCTACGCGCT
ACCGATATAG TGGGCAGACT CGGCGGCGAT GAATTTATCG TTTGGCTTGA TATGCTCCCT
GAACCAATCA ATATAGAACA TAAAATAAAC CAGCTATTAA CCAATATTAA GCAACCGATC
ATTATTGGGA AGCATACTTT AGAAGTTGGC GCCAGTATCG GAATTAGTGT ACTGCCAGAA
CATGGTTTAA ATAGCCGAGA ACTCATCACT GCAGCCGATA CCGCTATGTA CCAGGCTAAA
GCAGACCATA GCATTGAGTA TTGTTTCTAT GCAGGCAGCT ATGGAGTCTC TACTTTGGCA
ACCTCATAG
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| Protein sequence | MMLSKRLKLT AILCSLLTLI VGLSLIQVHY YQQQIYRQLN YSMKLQISID SLRSQLWLYQ
EYTDDQGLSE LNTRQAELAK NLSEDIQWAT QQKLIIGNLN RLNTNIRALI NTQNSFHSKQ
VDVSSTLTAE RLFKAKYSMV IEEMTEEMFN LHQLSIKQAK QKQQTLLFLV GVVLLILAIM
VTAWSFMTLI RFKKGLASLN QGMEALAAGD LKSQINFSDT DELSALAQNF NRMKLSLAQI
TVKKDELKQE VDSQTRKLIE QQDQLIFLAE HDELTGIYNR RAFIKQIDTA IARDLRGDNQ
AALLFIDLNK FKNINDTLGH SIGDEVIMTI AKRLVNSLRA TDIVGRLGGD EFIVWLDMLP
EPINIEHKIN QLLTNIKQPI IIGKHTLEVG ASIGISVLPE HGLNSRELIT AADTAMYQAK
ADHSIEYCFY AGSYGVSTLA TS
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