| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3377 |
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| Symbol | |
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| ID | 4280279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4023038 |
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| End bp | 4024522 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638136198 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_752052 |
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| Protein GI | 114564538 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.205873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCGT CACTCCAACT TAAAATGGGT CAACACTTAA CCATGACCCC ACAATTGCAG
CAAGCCATTC GCTTACTGCA ATTATCGTCA TTGGAGCTAC AGCAGGAAAT CCAACAAGCA
TTAGATTCAA ATCCATTGCT TGAAATAGAA GATGAGTTTT CTGAAGCAAA AGACTCCTTA
AAGGAAAATC GCGACCAAGC GGATACCGAC TTTAGTGACA ACAGCATTGT TAATGTCGAA
AAAGATACTT CCACTGTCGA CATTGCAGAA TCCATGACCA AAGAAACCAT GGATGATTTA
GCCATGGATA CCACATGGGA CGAAGTGTAC ACAGCCTCAC CAATGTCAGG TTCAGGCAGT
GCGAGCATGC GCGATGACGA CATGCCCTTT CAAGGTGAAA CGACCGAAGG TTTGTACGAA
CATTTAGAAT GGCAAAAAAA TCTTACCCCA TTTTCAGACA CTGATCTCGC CATTGCCACC
GCCATTATTG ATGCCATAGA TGAACGCGGT TATTTAACCC AAAGTACCGA AGATATTCTT
GAAGCCATGG GTGATGAAAA TGTGGAACTT GATGAAGTTG AAGCGGTATT AAAACGCGTT
CAACACTTTG ACCCTGTTGG TGTTGCTGCA CGTGATTTAA GTGAATGTCT ATTTATTCAA
TTAGCACAAT TCTCTAACGA CACACCACAT ATCGATAATG CTCGTTTGTT AATTAAAGGC
TATTTAGATT TAATTGCTGG CCGTGATTTC AGATTATTGA TGCGTAAAAC AAAACTAAAA
GAAAATGAAT TACGTGACGC AATCACTCTA ATTCAGACAC TCAATCCTCG TCCTGGTTTA
TTAATTACCC CAATGGATGA TGAATACGTT ATTCCCGATG TCACTGTATT AAAGAAAAAT
GGTCGCTGGG TTGTAGAGTT AAACCCAGAC AACATGCCTA AAATTGGTGT TAATCAGCAA
TACGCGGCCA TGGCTAGAGG CAGTAAAAAC CCGTCGGATA GTCAATTTAT TCGAGGCCAT
CTGCAAGAGG CTAAATGGTT TATTAAAAGT ATTGAAAGTC GCAACGATAC TTTACTTAAA
GTGGCAAATT GCATTGTACA ATTTCAGCAA GGCTTTTTTG AATATGGCGA AGAAGCCATG
AAGCCTATGG TGCTCAATGA TATTGCGGAA GCAGTAGAGA TGCACGAATC GACCATTTCA
CGAGTCACCA CACAAAAATA TATGCACACC CCACGAGGGT TGTTTGAACT AAAATACTTC
TTCTCTAGCC ATGTCAGTAC TGACGATGGC GGGGAATGCT CATCTACAGC CATTCGTGCT
TTTATCAAAA AGCTGGTTGC CGCAGAAAAC CAGAAAAAAC CACTGAGCGA CAGTAAAATG
GCTCAGCTTC TGGCAGAACA GGGCATAAAC GTTGCGCGTC GTACGATTGC AAAATACCGT
GAAGCAATGA TGATCCCGCC CTCAAACCAA CGTAAGAGTT TATAA
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| Protein sequence | MKASLQLKMG QHLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLEIE DEFSEAKDSL
KENRDQADTD FSDNSIVNVE KDTSTVDIAE SMTKETMDDL AMDTTWDEVY TASPMSGSGS
ASMRDDDMPF QGETTEGLYE HLEWQKNLTP FSDTDLAIAT AIIDAIDERG YLTQSTEDIL
EAMGDENVEL DEVEAVLKRV QHFDPVGVAA RDLSECLFIQ LAQFSNDTPH IDNARLLIKG
YLDLIAGRDF RLLMRKTKLK ENELRDAITL IQTLNPRPGL LITPMDDEYV IPDVTVLKKN
GRWVVELNPD NMPKIGVNQQ YAAMARGSKN PSDSQFIRGH LQEAKWFIKS IESRNDTLLK
VANCIVQFQQ GFFEYGEEAM KPMVLNDIAE AVEMHESTIS RVTTQKYMHT PRGLFELKYF
FSSHVSTDDG GECSSTAIRA FIKKLVAAEN QKKPLSDSKM AQLLAEQGIN VARRTIAKYR
EAMMIPPSNQ RKSL
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