Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3375 |
Symbol | |
ID | 4280277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4021586 |
End bp | 4022167 |
Gene Length | 582 bp |
Protein Length | 193 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638136196 |
Product | OstA family protein |
Protein accession | YP_752050 |
Protein GI | 114564536 |
COG category | [S] Function unknown |
COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.25365 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCACA TTAATCGTCT CCACACTCGC GCCAATGTTG TGTTACTAAG TAGCATACTT TGCATATTGA GTTTGCCAGC CACAGCGAAA CAAGGTGATC TGAAACAAGA ATTGAAAATC GCTTCCGCCA GTCAGTCTGC CGACATTAAG AACAATCAAA TTGTTTTTAA TGGTCCGGTG ACAATTGTCC AAGGCACGAT TAATATCAAT GCAGATCAGT TACGGGCGTT TACCCCTGAA AACAGCACCA GCAAGAGATT AATTGCTACT GGCACCCCTG CTACATTTTC ACAAGAATTA GATGACGGTA AAATTGGTAC TGCAAGTGCT AACGAAATTA GCTATGACCT TGCCACCACT ACACTCACAT TGACTGGCAA CGCCAAATTG GATCAATCTG GTAGCCAGGT TACCGGTAAT AAAATCAAGT ACAACATCAG TGCTCAAGAG CTGATTGCCG AAAGTACTGG TACAGGACAA GATCGGGTAA TCACCATCAT TCAACCAGAG AATTTCCAAG ACGAGTCGGC GCCAAAGCAA AAGCTCCCTA AAATCCCTGT TAACAAGCAG ATCAAACCAT GA
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Protein sequence | MSHINRLHTR ANVVLLSSIL CILSLPATAK QGDLKQELKI ASASQSADIK NNQIVFNGPV TIVQGTININ ADQLRAFTPE NSTSKRLIAT GTPATFSQEL DDGKIGTASA NEISYDLATT TLTLTGNAKL DQSGSQVTGN KIKYNISAQE LIAESTGTGQ DRVITIIQPE NFQDESAPKQ KLPKIPVNKQ IKP
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