| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3363 |
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| Symbol | |
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| ID | 4280265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4012481 |
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| End bp | 4013560 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638136184 |
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| Product | periplasmic serine protease DegS |
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| Protein accession | YP_752038 |
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| Protein GI | 114564524 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.120953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTAA AAGACACTTG CATCTATATA ACTAAAGCTG TGGTATTTGG TCTAGTCATG
GCAGCTGTTT TCTTAGCCAT AACCTCTTTG ACACAAAACT CCTCGCTCAA CCATAGCTTA
ACGAATGTAA GCAATAATGG CTCAGAATTA TCTTTTGCTA AAGCGGTCCG CCGTGCAGCC
CCTGCCGTTG CGAATATTTA TAGCCTTAGC ATTGATCAAC ATAATCCACT CAATTCAAGC
TCACTTCAAG GCCTCGGCTC AGGAGTCATA ATGAGTAAAG AAGGTTATGT GTTAACCAAT
TACCATGTGA TAAAAAAAGC TGATGAGATT GTGATTGCAC TGCAAGATGG GCGCAAATTT
ACTGCTGAAG TGGTTGGTTC AGATCCCGAA ACTGATTTAG CAGTGCTCAA GATTGAAGGT
GACAATTTAC CAATCGTGCC GATTAATCTT AATAAGCTCG CCCAAGTAGG TGATGTGGTA
TTGGCCATTG GCAATCCTTA TAATATTGGC CAAACCATTA CCCAAGGGAT TATCAGTGCA
ACAGGACGTA ACGGCTTAAG TTCAGGTTAC TTAGACTTTC TACAAACTGA TGCCGCCATT
AATGCAGGCA ATTCTGGCGG CGCATTAATC GACACCAGTG GTGAATTAAT TGGCATTAAT
ACTGCCGCAT TCCAAGTGGG TGGTGATAAT GGTGGCAATG GGATTAGTTT CGCGATTCCA
ATTAAATTAG CCCACAGTAT TATGGATAAA TTGGTTAAGC ATGGCCGGGT TATTCGTGGC
GCATTAGGAA TTTCGGGTGA GCCGTTAAAC CCTGTAATGG CTCAGATACT CAACTTGCCT
GATTTAAAAG GTGTGTTGGT TACGGGTATT GATCCTGATG GACCGGCTGC ACGTGCACGC
TTATCACCTA GAGATGTTAT TACTCAATAT AATGACGAAG ATGTTCCTGG TGTTGAAATG
TTAATGGACA GAATTGCAGA AACCACGCCG GGGACTAAAG TCAATATGAC CATTATTCGT
GAAGGTAAAA AGCAAACATT ACCGGTGATT ATTTCAGAAA AAGTCCCTGC AGCAGAGTAG
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| Protein sequence | MNLKDTCIYI TKAVVFGLVM AAVFLAITSL TQNSSLNHSL TNVSNNGSEL SFAKAVRRAA
PAVANIYSLS IDQHNPLNSS SLQGLGSGVI MSKEGYVLTN YHVIKKADEI VIALQDGRKF
TAEVVGSDPE TDLAVLKIEG DNLPIVPINL NKLAQVGDVV LAIGNPYNIG QTITQGIISA
TGRNGLSSGY LDFLQTDAAI NAGNSGGALI DTSGELIGIN TAAFQVGGDN GGNGISFAIP
IKLAHSIMDK LVKHGRVIRG ALGISGEPLN PVMAQILNLP DLKGVLVTGI DPDGPAARAR
LSPRDVITQY NDEDVPGVEM LMDRIAETTP GTKVNMTIIR EGKKQTLPVI ISEKVPAAE
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