| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3362 |
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| Symbol | |
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| ID | 4280264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4010976 |
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| End bp | 4012325 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136183 |
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| Product | protease Do |
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| Protein accession | YP_752037 |
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| Protein GI | 114564523 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0172053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAACCA AATTAAGCTT ACTTTCTGCT GCGTTATTAA CTGCATCGTT AGCCATGACA
CCCGCGCTAT CATTCGCTGC AATTCCACAA GCCGTCGACG GGCAAGCCAT TCCTAGCTTA
GCGCCAATGT TAGAACGGAC AACGCCAGCG GTTGTGTCGG TAGCAGTATC GGGCACCCAA
GTTTCAAAAC AACGAGTACC GGATGTGTTT CGCTACTTCT TTGGTCCTAA TGCACCACAA
GAACAAGTTC AAGAACGCCC TTTTAGAGGT TTAGGTTCAG GCGTTATTAT TGATGCAGAC
AAAGGCTACA TCATTACCAA TAACCATGTA ATCAATGGTG CAGACGATAT CCAAATTGGT
TTACATGATG GCCGTGAAGT TAAAGCAAAA CTAATCGGTG CAGATAAAGA ATCTGATATT
GCCCTACTTC AAATTGAAGC AAAAAACTTA ATTGCTATTA AACAAACTGA TTCTGATGAA
ATTCGCGTCG GTGATTTTGC AGTGGCCATT GGTAACCCAT TTGGTCTTGG ACAAACCGTC
ACGTCAGGGA TAGTCAGCGC GCTAGGCCGC AGTGGTTTAG GCATTGAAAT GCTCGAAAAC
TTTATCCAAA CCGATGCAGC TATAAATAGT GGTAACTCGG GCGGTGCATT AGTTAACTTA
AAAGGTGAAC TCATCGGAAT TAATACCGCC ATTGTCGCCC CTAATGGTGG TAACGTCGGT
ATTGGTTTCG CAATCCCTGC CAATATGGTG AATAACCTTG TAGAGCAAAT TATTGAACAC
GGTGAAGTAA GACGTGGCGT GCTCGGAGTA TCAGGACGAG ACCTTGATAA TGAACTCGCT
AAAGCGTTTG GTTTAGACAC TCAACATGGT GGCTTTGTGA ATGAAGTCAT GCCAAAGAGC
GCAGCTGACA AAGCCGGACT AAAAGCGGGT GATATTATTA CCAGCCTGAA TGGCCGTAGC
ATTAAAACCT TCCAAGAACT TCGTGCAAAA GTTGCCACTA TGGGCGCAGG TGCTGAAGTA
GAATTTGGGA TTATTCGTGA CGGTGATAAA AAGACCATTA AAACAACTTT AGGTGAAGCG
GATAAAGTCG AAGCAGAAGC GGGTAACGTA CACCCTATGT TACAAGGCGC AACCTTAGAA
GACAGCAAGA AAGGCATCCA GATCACTGAG ATTGCTCAAG GCTCGCCAGC TGCAATGAGT
GGTTTACAGA AAGGCGACTT AATAGTGGGA CTTAATCGCA ACAAAGTGAC CAGCCTTAAA
GCATTAAAAG AAATGCTGAA AGACAATCAA AACTCTGTCG CGCTAAAAAT ATTACGTGAT
AACAACTTGC TATATCTTGT TTTACGCTAG
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| Protein sequence | MKTKLSLLSA ALLTASLAMT PALSFAAIPQ AVDGQAIPSL APMLERTTPA VVSVAVSGTQ
VSKQRVPDVF RYFFGPNAPQ EQVQERPFRG LGSGVIIDAD KGYIITNNHV INGADDIQIG
LHDGREVKAK LIGADKESDI ALLQIEAKNL IAIKQTDSDE IRVGDFAVAI GNPFGLGQTV
TSGIVSALGR SGLGIEMLEN FIQTDAAINS GNSGGALVNL KGELIGINTA IVAPNGGNVG
IGFAIPANMV NNLVEQIIEH GEVRRGVLGV SGRDLDNELA KAFGLDTQHG GFVNEVMPKS
AADKAGLKAG DIITSLNGRS IKTFQELRAK VATMGAGAEV EFGIIRDGDK KTIKTTLGEA
DKVEAEAGNV HPMLQGATLE DSKKGIQITE IAQGSPAAMS GLQKGDLIVG LNRNKVTSLK
ALKEMLKDNQ NSVALKILRD NNLLYLVLR
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