| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3327 |
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| Symbol | |
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| ID | 4280229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3976379 |
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| End bp | 3978265 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638136148 |
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| Product | DNA topoisomerase IV subunit B |
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| Protein accession | YP_752002 |
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| Protein GI | 114564488 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.603705 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAACC AATATACTTC TGACGCTATT GAGGTCCTTA ATGGACTTGA CCCGGTAAAA
CGCCGTCCAG GTATGTATAC CGACACCTCT AGACCTAATC ACCTTGGGCA AGAAGTCATT
GATAACAGTG TTGATGAAGC TCTGGCGGGA CATGCGACTA AAATTGAAGT TGTACTCCAT
ACCGATAACT CCCTTGAAGT GACCGATGAT GGCCGTGGTA TGCCGGTGGA TATTCACGCT
GAAGAAGGCA TTCCTGGGGT TGAACTTATT CTGACTAAAT TGCACGCTGG TGGTAAGTTT
TCTAATAAAA ACTACCAGTT CTCGGGCGGT TTACACGGGG TTGGTATTTC TGTTGTTAAC
GCCTTATCCA CCCGAGTTGA AATCAGTGTT CGTCGTGATG CGCAAATATA CCAAATGGCC
TTTGAGAATG GTTTCAAGGT TGAAGAGTTG GTGGTAACCG GTACTTGTGG ACGACGTAAT
ACCGGTACTA GAGTGCATTT CTGGCCCGAT GTAAGTTATT TTGATTCACC TAATTTCTCG
GTCAGTAAGT TAATTTACAT CTTGCGAGCT AAAGCGGTAT TGTGCCCTGG CTTACGGATT
AAATTCACCA ATAAACAAAA TGGTGATGTG CATGAATGGT TTTATGAAAG TGGCTTAACC
GATTACCTCA AAGAAGCGAT AAAAGACTCG GTTTTATTGC CAGAAGAACC CTTTGTCGGC
AGCTTTAAAG GCAAATTAGA AGCTGCTGAG TGGGCTATTA CATGGTTGCC TGAAGGTGGC
GAGAGTTTAA GTGAAAGCTA TGTGAACTTA ATTCCGACAC CATTAGGTGG TACTCATGTG
AATGGGTTTA GACAAGGTTT GCTTGAGTCT ATGCGTGAGT TTTGTGAATT TCGTAATCTT
GTTCCTCGGG GGATTAAATT ATCGCCCGAA GATATTTGGG ACCGTGCGGC GTTTATTTTA
TCGATAAAAA TGCAAGACCC TCAATTTGCT GGGCAAACCA AAGAGAAATT ATCGAGCCGT
CAAAGCTCGG CATTTGTTTC TGGTATTGCT CGCGATGCCT TTTCGCTGTG GTTAAACTCC
AATACTGAGC TAGCAGAGCA GTTAGCAGAA CTGTGTATTG GTAATGCATT GCGCCGCTTA
AAGGCCGCTA AAAAAGTCGC ACGTAAAAAA GTCACCTCCG GACCGGCATT ACCAGGCAAG
CTAACCGATT GTAGCGGCCA AGATCCAATG CGAGGAGAGC TGTTTTTAGT AGAAGGTGAT
TCAGCTGGTG GTAGTGCCAA ACAAGCACGA GACCGCGAGT TTCAAGCAAT TATGCCGCTA
AGAGGTAAGA TTTTAAATAC TTGGGAAGTC GATTCCGGAC AAGTGTTAGC GTCGCAAGAG
GTACATAATA TTTCGATTGC GATTGGTTGC GATCCTGACA GTGATGATAT TTCAGAATTA
CGTTATGGTA AAATTTGTAT CTTAGCCGAT GCGGATTCTG ATGGATTGCA TATTGCCACA
CTATTATGTG CGTTGTTTTT AAAGCATTAT CGTGTATTAG TTAACAATGG TCATGTGTAT
ATTGCTATGC CACCGTTATT TCGTATTGAT ATTGGTAAAG AGGTTTTTTA CGCCCTGGAT
GAGGCTGAAA AAGTCGGCAT TTTAGATCGT ATTACGGCAG AAAATAAAAA AGGTAAAGTG
CAAGTGACTC GCTTTAAAGG TCTGGGTGAA ATGAACCCGT TGCAACTACG TGAAACCACT
ATGGATCCCA ATACTAGACG CTTAGTGCAA TTAACTATTG ATGATGCCGA TGAGACAGTG
GCATTAATGG ATATGTTACT TGCCAAAAAG CGTGCTCCTG ATCGTAAAAG TTGGTTAGAA
ACCAAAGGTG ACCTAGCGTT GCTTTAG
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| Protein sequence | MSNQYTSDAI EVLNGLDPVK RRPGMYTDTS RPNHLGQEVI DNSVDEALAG HATKIEVVLH
TDNSLEVTDD GRGMPVDIHA EEGIPGVELI LTKLHAGGKF SNKNYQFSGG LHGVGISVVN
ALSTRVEISV RRDAQIYQMA FENGFKVEEL VVTGTCGRRN TGTRVHFWPD VSYFDSPNFS
VSKLIYILRA KAVLCPGLRI KFTNKQNGDV HEWFYESGLT DYLKEAIKDS VLLPEEPFVG
SFKGKLEAAE WAITWLPEGG ESLSESYVNL IPTPLGGTHV NGFRQGLLES MREFCEFRNL
VPRGIKLSPE DIWDRAAFIL SIKMQDPQFA GQTKEKLSSR QSSAFVSGIA RDAFSLWLNS
NTELAEQLAE LCIGNALRRL KAAKKVARKK VTSGPALPGK LTDCSGQDPM RGELFLVEGD
SAGGSAKQAR DREFQAIMPL RGKILNTWEV DSGQVLASQE VHNISIAIGC DPDSDDISEL
RYGKICILAD ADSDGLHIAT LLCALFLKHY RVLVNNGHVY IAMPPLFRID IGKEVFYALD
EAEKVGILDR ITAENKKGKV QVTRFKGLGE MNPLQLRETT MDPNTRRLVQ LTIDDADETV
ALMDMLLAKK RAPDRKSWLE TKGDLALL
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