Gene Sfri_3314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3314 
Symbol 
ID4280216 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3960041 
End bp3961384 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content43% 
IMG OID638136132 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_751989 
Protein GI114564475 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000664916 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTTTAA AAAATACGTT TTTTACCTCT GTAGTCTTCA TGCTGTTGTT TTTGCAGTCT 
AATGTGGTTT GGGCTGCCAA CCAACTTGAT AGCGTGCGCA TTTGGGCTGC CCCAGAATCG
ACGCGAGTCG TATTTGATTT AACCCAAACC CCTAATTATG ACAGTTTTAC CTTAACCGGC
CCTCATCGTT TAGTGGTCGA TATTCAAGAT ACTGGCGCCA AGATTAATTT AGATAAAATA
GCTAACAACA GTAAAATTAT CAAAAAGATA CGTTTTAGCT CTCCACCTAA AAAAGGTGTA
TTGCGCCTGG TTATGGATTT AACTAAACCG GTAAAATCCA GTCTATTTAC TTTGCCTCCT
ACTGCTCCAT ATGGAAACCG CCTTGTCGTC GACTTAGAAG ATTCTAACGG CGAGTCGCCA
ACGGTGAATG CGGTTAGTCG CTCTGCTAAT CAGTCATCTA GAGACATTGT GGTTGCCATT
GATGCTGGAC ACGGTGGTGA AGACCCAGGA TCAATTGGTC CCTCCGGTAC TTACGAAAAG
CGTGTGGTGA TGGAAATAGC AACTCGTTTA GCCAGTAAAA TTAATCAAAC TGCAGGAATG
CGTGCAGTGA TGACACGGCG TGGTGATTAT TATATTCATC CCAATAAACG TTCTGAGTTG
GCTCGTAATA TTAAAGCAGA TTTATTGATT TCAATTCATG CAGATGCATT TACTTCTCCT
AAGCCTCAGG GCGCTTCGGT TTGGGTATTA TCTATGCGCC GTGCAAATAC TGAAATTGGT
CGTTGGCTTG AGCAAAAAGA GAAGCACTCT GAGCTATTAG GTGGTGCTGG AGAAATTATT
CAAAATTCTG ATAGCGAGCA ATATTTAGCT ATGACCCTTT TAGATATGTC GATGAATAGT
TCTATGGCGA TAAGTAATTC TATTGCTGGC GATGTATTAA AAGATCTCAA CGGTGTCACC
AAATTACATA AACATAAACC AGAAGCTGCG AGTTTGGCGG TACTTAAATC ACCGGACATT
CCTTCTATTT TAGTGGAAAC CGGTTTTATT TCTAATCCAC AAGAAGAGCG TTTACTCAGA
AGCCCGGCAC ATCAAGAAAA AATAGCACGC GCCATCCATT CGGGGGTGCA ACGTTATTTT
GCTAGTAATG CGCCCAGCGA TACATTGATT GCGAAAGCGC GATCTAGTAG CTCGCAAGCA
CAAAAGCATA AAGTGCAACG CGGTGAGTCA CTGTCTGTTA TCGCCCAGCG ATATCGCGTT
TCTATTTCAC GTTTAAAGCA GGCCAATAAC TTGAAGTCGG ACGTGGTACG TGTTGGTCAA
CATCTTGTGA TCCCAAGGGC TTAA
 
Protein sequence
MTLKNTFFTS VVFMLLFLQS NVVWAANQLD SVRIWAAPES TRVVFDLTQT PNYDSFTLTG 
PHRLVVDIQD TGAKINLDKI ANNSKIIKKI RFSSPPKKGV LRLVMDLTKP VKSSLFTLPP
TAPYGNRLVV DLEDSNGESP TVNAVSRSAN QSSRDIVVAI DAGHGGEDPG SIGPSGTYEK
RVVMEIATRL ASKINQTAGM RAVMTRRGDY YIHPNKRSEL ARNIKADLLI SIHADAFTSP
KPQGASVWVL SMRRANTEIG RWLEQKEKHS ELLGGAGEII QNSDSEQYLA MTLLDMSMNS
SMAISNSIAG DVLKDLNGVT KLHKHKPEAA SLAVLKSPDI PSILVETGFI SNPQEERLLR
SPAHQEKIAR AIHSGVQRYF ASNAPSDTLI AKARSSSSQA QKHKVQRGES LSVIAQRYRV
SISRLKQANN LKSDVVRVGQ HLVIPRA