| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3314 |
|---|
| Symbol | |
|---|
| ID | 4280216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3960041 |
|---|
| End bp | 3961384 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638136132 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_751989 |
|---|
| Protein GI | 114564475 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000664916 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTAA AAAATACGTT TTTTACCTCT GTAGTCTTCA TGCTGTTGTT TTTGCAGTCT
AATGTGGTTT GGGCTGCCAA CCAACTTGAT AGCGTGCGCA TTTGGGCTGC CCCAGAATCG
ACGCGAGTCG TATTTGATTT AACCCAAACC CCTAATTATG ACAGTTTTAC CTTAACCGGC
CCTCATCGTT TAGTGGTCGA TATTCAAGAT ACTGGCGCCA AGATTAATTT AGATAAAATA
GCTAACAACA GTAAAATTAT CAAAAAGATA CGTTTTAGCT CTCCACCTAA AAAAGGTGTA
TTGCGCCTGG TTATGGATTT AACTAAACCG GTAAAATCCA GTCTATTTAC TTTGCCTCCT
ACTGCTCCAT ATGGAAACCG CCTTGTCGTC GACTTAGAAG ATTCTAACGG CGAGTCGCCA
ACGGTGAATG CGGTTAGTCG CTCTGCTAAT CAGTCATCTA GAGACATTGT GGTTGCCATT
GATGCTGGAC ACGGTGGTGA AGACCCAGGA TCAATTGGTC CCTCCGGTAC TTACGAAAAG
CGTGTGGTGA TGGAAATAGC AACTCGTTTA GCCAGTAAAA TTAATCAAAC TGCAGGAATG
CGTGCAGTGA TGACACGGCG TGGTGATTAT TATATTCATC CCAATAAACG TTCTGAGTTG
GCTCGTAATA TTAAAGCAGA TTTATTGATT TCAATTCATG CAGATGCATT TACTTCTCCT
AAGCCTCAGG GCGCTTCGGT TTGGGTATTA TCTATGCGCC GTGCAAATAC TGAAATTGGT
CGTTGGCTTG AGCAAAAAGA GAAGCACTCT GAGCTATTAG GTGGTGCTGG AGAAATTATT
CAAAATTCTG ATAGCGAGCA ATATTTAGCT ATGACCCTTT TAGATATGTC GATGAATAGT
TCTATGGCGA TAAGTAATTC TATTGCTGGC GATGTATTAA AAGATCTCAA CGGTGTCACC
AAATTACATA AACATAAACC AGAAGCTGCG AGTTTGGCGG TACTTAAATC ACCGGACATT
CCTTCTATTT TAGTGGAAAC CGGTTTTATT TCTAATCCAC AAGAAGAGCG TTTACTCAGA
AGCCCGGCAC ATCAAGAAAA AATAGCACGC GCCATCCATT CGGGGGTGCA ACGTTATTTT
GCTAGTAATG CGCCCAGCGA TACATTGATT GCGAAAGCGC GATCTAGTAG CTCGCAAGCA
CAAAAGCATA AAGTGCAACG CGGTGAGTCA CTGTCTGTTA TCGCCCAGCG ATATCGCGTT
TCTATTTCAC GTTTAAAGCA GGCCAATAAC TTGAAGTCGG ACGTGGTACG TGTTGGTCAA
CATCTTGTGA TCCCAAGGGC TTAA
|
|---|
| Protein sequence | MTLKNTFFTS VVFMLLFLQS NVVWAANQLD SVRIWAAPES TRVVFDLTQT PNYDSFTLTG
PHRLVVDIQD TGAKINLDKI ANNSKIIKKI RFSSPPKKGV LRLVMDLTKP VKSSLFTLPP
TAPYGNRLVV DLEDSNGESP TVNAVSRSAN QSSRDIVVAI DAGHGGEDPG SIGPSGTYEK
RVVMEIATRL ASKINQTAGM RAVMTRRGDY YIHPNKRSEL ARNIKADLLI SIHADAFTSP
KPQGASVWVL SMRRANTEIG RWLEQKEKHS ELLGGAGEII QNSDSEQYLA MTLLDMSMNS
SMAISNSIAG DVLKDLNGVT KLHKHKPEAA SLAVLKSPDI PSILVETGFI SNPQEERLLR
SPAHQEKIAR AIHSGVQRYF ASNAPSDTLI AKARSSSSQA QKHKVQRGES LSVIAQRYRV
SISRLKQANN LKSDVVRVGQ HLVIPRA
|
|---|
| |