| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3312 |
|---|
| Symbol | miaA |
|---|
| ID | 4280214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3957252 |
|---|
| End bp | 3958142 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638136130 |
|---|
| Product | tRNA delta(2)-isopentenylpyrophosphate transferase |
|---|
| Protein accession | YP_751987 |
|---|
| Protein GI | 114564473 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase |
|---|
| TIGRFAM ID | [TIGR00174] tRNA isopentenyltransferase (miaA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.637553 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCCTA CCGCCTCAGG CAAAACGGCA TTAGCCATTG ATATGGCGAC TCAATATAAT
TGCGAAATTA TCTCAGTGGA TTCTGCATTG ATATACCGTG ATATGAATAT TGGGTCTGCT
AAACCCAGTG CTGAAGAACT GGAAATGGCT CCGCATAAAT TAATTGATAT TCTTGACCCA
AGTGAGAGTT ATTCAGCGGC AGATTTTCGC CGTGATGCAT TATTGGCTAT AGAAGACATC
ATTAGCCGTG GTAAGACCCC TTTACTCGTG GGTGGTACCA TGATGTACTT TAAGGCATTG
TTAGAAGGCT TATCACCATT ACCTAGTGCT GATGAAGCCA TTAGGCAACA AATATTAGCG
CAAGCGCAAA CCGAGGGTTG GGAAGCGCTG CATCAAGAAT TATGTAACAT AGACCCTGTT
GCTGGAGAAA GAATTCATCC AAACGATCCA CAACGGTTGT CAAGAGCATT AGAGGTTTAT
CGGATCAGTG GCAAAACAAT GACTGAATTG ACACAAACTA AGTCAGCCGC TTTGCCGTAT
GATGTAGTGC AATTTGCTAT TGCACCAAAC GATCGAAAAG TTTTACATGA GTTAATCGCT
AAGCGTTTTA ATATCATGTT AGAGCAAGGT TTTATCGAAG AAGTTGCGCG TTTGAAAGCG
CGTGATGATT TGCATTTAGA GCTACCATCA ATGCGTTGTG TTGGTTACAG ACAGTGCTGG
CAGTACTTAG ATAATGAATT TGATCATGCG ACAATGGTCG AAAAAGCTAC CGCAGCTACT
AGGCAATTGG CTAAACGTCA ATTAACATGG TTGAGGAGCT GGCCAGATTT ACAGTGGCTT
GAAAGTGGTG TAGAAGGGAA TTTAGTTACG CTTATGCGAC AAAGCCGCTA G
|
|---|
| Protein sequence | MGPTASGKTA LAIDMATQYN CEIISVDSAL IYRDMNIGSA KPSAEELEMA PHKLIDILDP
SESYSAADFR RDALLAIEDI ISRGKTPLLV GGTMMYFKAL LEGLSPLPSA DEAIRQQILA
QAQTEGWEAL HQELCNIDPV AGERIHPNDP QRLSRALEVY RISGKTMTEL TQTKSAALPY
DVVQFAIAPN DRKVLHELIA KRFNIMLEQG FIEEVARLKA RDDLHLELPS MRCVGYRQCW
QYLDNEFDHA TMVEKATAAT RQLAKRQLTW LRSWPDLQWL ESGVEGNLVT LMRQSR
|
|---|
| |