| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3299 |
|---|
| Symbol | argD |
|---|
| ID | 4280201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3943279 |
|---|
| End bp | 3944496 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638136117 |
|---|
| Product | bifunctional N-succinyldiaminopimelate-aminotransferase/ acetylornithine transaminase protein |
|---|
| Protein accession | YP_751974 |
|---|
| Protein GI | 114564460 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
|---|
| TIGRFAM ID | [TIGR00707] acetylornithine and succinylornithine aminotransferases
[TIGR03246] succinylornithine transaminase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTAG AAATGAATCT AACCCGTGCC CAATTCGATG AAGTTATGGT GCCTAATTAT
GCGCCTGCCG CTGTTATTCC TGTTCGCGGA GCAGGTAGCC GAGTATGGGA TCAAGAAGGT
AATGAATTCA TCGATTTTGC CGGTGGTATT GCAGTAAATT GTTTAGGTCA TTGTCACCCA
GCTTTAGTGT CAGCATTAAA AGAGCAAGGC GAAAAGTTAT GGCATTTATC AAACGTAATG
ACCAACGAGC CTGCACTAGA ATTAGCGACA AAGTTAGTTA ATGCAACGTT TGCTGAGCGC
GTCTATTTTG CTAACTCGGG TGCAGAAGCC AATGAAGCAG CATTAAAATT AGCTCGCCGT
TATGCATTAG ATAACCATGG TGCAGATAAA GACCAAATCA TCGCATTCGA TAAAGCTTTC
CACGGCCGTA CATTCTTTAC TGTAACAGTT GGCGGACAAG CTGCTTATTC AGACGGTTTT
GGCCCTAAGC CACAAAGTAT TACTCACGTG CCATTTAATG ATATCGCAGC ACTTGAAGCG
GTAATTTCTG ACAAGACTTG TGCCATTATG CTTGAACCTC TTCAAGGTGA AGGCGGGATT
ATCAATGGTG ATCCTGAGTT CTTAAAAGCA GTACGTCGTT TAGCTGATAA GCATGACGCA
TTAGTGATTT TTGATGAAGT ACAAACTGGT GTAGGCCGTA CTGGTGAGTT ATTTGCTTAC
ATGGGTACAG ACATCGTGCC AGATATTTTA ACCAGTGCCA AAGCGCTAGG CGGTGGCTTC
CCTATTGCTG CAATGCTAAC TAGCGCAAAA ATTGCTGCTC ACCTAAAAAT TGGTACTCAC
GGTTCTACTT ATGGCGGCAA CCCACTGGCT TGTGCTGTAG GTAATGCAGT AATGGACGTG
GTTAATACCA AAGAAGTGTT GGACGGAGTT AAACATCGCG AACAGTTATT CCGTGATGGT
TTAGCGGCTA TTAACGCCAA ATACAACGTA TTCAGTGAAG TACGTGGTAA AGGCTTGTTA
ATCGGTGCGG TATTAAATGA ACAATATGAA GGTCGTAGCC GTGACTTCTT GGTTGCTTCT
GTTGCTGAAG GCCTTATGAG TTTGATGGCT GGTGCAAACG TTGTGCGTTT TGCTCCTTCA
TTAGTGATCC CAGAAGCAGA CATCGCAGAA GGCTTGTTGC GTTTTGAACG CGCAGTAGCA
AAAGTGGTTG CTGGTTAA
|
|---|
| Protein sequence | MSVEMNLTRA QFDEVMVPNY APAAVIPVRG AGSRVWDQEG NEFIDFAGGI AVNCLGHCHP
ALVSALKEQG EKLWHLSNVM TNEPALELAT KLVNATFAER VYFANSGAEA NEAALKLARR
YALDNHGADK DQIIAFDKAF HGRTFFTVTV GGQAAYSDGF GPKPQSITHV PFNDIAALEA
VISDKTCAIM LEPLQGEGGI INGDPEFLKA VRRLADKHDA LVIFDEVQTG VGRTGELFAY
MGTDIVPDIL TSAKALGGGF PIAAMLTSAK IAAHLKIGTH GSTYGGNPLA CAVGNAVMDV
VNTKEVLDGV KHREQLFRDG LAAINAKYNV FSEVRGKGLL IGAVLNEQYE GRSRDFLVAS
VAEGLMSLMA GANVVRFAPS LVIPEADIAE GLLRFERAVA KVVAG
|
|---|
| |