Gene Sfri_3292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3292 
Symbol 
ID4280194 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3936621 
End bp3937256 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content39% 
IMG OID638136110 
ProductcAMP-regulatory protein 
Protein accessionYP_751967 
Protein GI114564453 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0112541 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCTGA TTGGTAAGCC AAAACCTGAC CCAACATTAG AATGGTTTCT TTCACATTGT 
CACATTCATA AGTACCCTGC AAAGAGTACT TTAATTCACG CAGGTGAAGA TTCTGACACT
TTATATTACA TCGTCAAAGG TTCCGTTGCT GTATTGATCA AAGATGAAGA AGGTAAAGAA
ATGATCCTTT CTTATCTAAA TCAAGGCGAC TTTATCGGTG AATTAGGATT GTTTGAAGAA
CAATCTGAAC GTACTGCATG GGTTCGTGCT AAACAAGCAT GTGAAATTGC AGAAATTTCT
TACAAGAAAT TTAAGCAATT GATTCAGGTA AACCCTGAAA TCTTGATGAA ACTTTCGGCG
CAAATGGCCT ATCGTTTACA AAGTACTAGC CAAAAAGTAG GCGACTTAGC GTTCCTTGAC
GTTGCTGGTC GCATTGCACA AACGTTATTA CACCTTGCAA AACAACCTGA TGCTATGACA
CATCCTGACG GCATGCAAAT TAAGATTACA CGTCAAGAGA TTGGTCAAAT TGTTGGTTGT
TCACGTGAGA CCGTTGGTCG TATTTTAAAA ATGCTTGAAG AACAAAATTT GATCCAAGCA
CACGGTAAAA CGATCGTAGT TTACGGTACG CGCTAA
 
Protein sequence
MALIGKPKPD PTLEWFLSHC HIHKYPAKST LIHAGEDSDT LYYIVKGSVA VLIKDEEGKE 
MILSYLNQGD FIGELGLFEE QSERTAWVRA KQACEIAEIS YKKFKQLIQV NPEILMKLSA
QMAYRLQSTS QKVGDLAFLD VAGRIAQTLL HLAKQPDAMT HPDGMQIKIT RQEIGQIVGC
SRETVGRILK MLEEQNLIQA HGKTIVVYGT R