Gene Sfri_3272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3272 
Symbol 
ID4280174 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3916025 
End bp3918286 
Gene Length2262 bp 
Protein Length753 aa 
Translation table11 
GC content41% 
IMG OID638136090 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_751947 
Protein GI114564433 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGATA GCACCCAGCA ACTATTGAAA AGTGTTTTTA CAAATGGACC TATTGAGGGT 
AATGATACTT CGGTGTTATC ACTGCTTAAT CAAGCATTAG AATTAGTCTG TCAAAGGCTA
GAATGCAGCG CTGCATTTGT GTTGACTAGT CAATATGATA AATTATTTGC CGTTGATACT
GATATTATCG ACACTTCAGA GCAACAATGT GTCAGTCATT TTGGTGCTTC ACCTGCATCA
GAAGCGCTGT TTAACAAGCA TTTACAAGAT AATTTATCAC TGTGCGAATC ATTATTTAAC
AGCCATCAAT CAATCATTTA TCCCCATTCC CCAGAGAAAT CATTTACCGC TGATGAAAAT
CGACTCCTTA CACCGCTTTT AGACATCTTT AATCAACTCG ATATTGATTG TAAGCATCTT
GCTCTGAGTC CTGTTTTGCA CGTTGGTAAT GTCAAAGTTG TTTTAGGCAC TATGTGTGCA
TCCGATGCTA ATCCCGTTGT GGGTCAGCAA GACGATCCTT GTGCGTTTGT GCAAAAGTTA
CTCGATGACA CCGCATACCA ATTAGCCTCT TCACTTGAGC TTCGTCGTTT ATCCGTGCTT
TTAGACAGTA AAGATAAACA GTATCAAGAG CTTTTTCAGT TACTGCCGAT GCCATGTGCG
CTGATTGATT TACACAATAA TGTTGTATTG CAAAATGATG CGAGTAAACA AAATTTGCCC
ATTACAGTCG GGCAGAGTTT ATTTTCGTTG TTACGAGAAG AAGATCATCC CTTGTTACTC
GATACCTTAC ATATCGTTCG AGAAGGTATT TTACGCCAAG CCTGGTGTGA AGTACCGTTA
CGAAATGGGG TTCAAATTTA CTGGTATAAA TTCAGCTTTT GTCATGCGCT TAATAAGCAG
CAACAGTTAT TGTTAATGAT TGAAGATGTC ACCGAGCGTT ATCGACTTGC CGATGAGTTA
TCGTTTCATT CAAATTATGA TGTGCTAACC GGATTACCAA ATCGATTGCA GTTCGAAAAC
ATGCTTGAAG AGTTATTAAA AGATGAAGAG CATATACCTG CTTGTATTGC CTTTCTCGAT
CTCGATCAAT TTCAAGTGGT AAATGATCTT AGCGGCCATC AAGCGGGTGA TGTGTTGCTG
CAACAAGTGG CTGTGCGATT AAAACAATTA TTACGTAAAG ACGATGTTGT TGCGCGTTTA
GGCGGCGATG AGTTTGGCTT ATTGATGCAC TATTCAGATA CCGCATCGGC GCAACAAGTG
GCAAAACGAA TTTGCCAACA GTTGTTTGAT CATGAATTTA CTTGGAAAGG TATCAAGCAC
AATATTAGTG CCAGTATTGG TATTGCCAAA GTCGATTATG TTGACTCAGA TATTTACGGC
GTGATGAGTA AAGCTGATGC CGCTTGCCGT CTGGCCAAAG AAGAAGGCCG TAACCGTTGG
CATTTTTATA ATCCTGACGA TCCACAAATG CACATGATGT ATAACCAAAT GTTGGCATCT
GTGGATATTA CAGGCGCACT GGCGTTAAAT CAGTTTGAGT TATTTTATCA ATTAATCGAG
CCGCTCGATA AACCCGACAC TGGTATCCAC ATGGAAATTC TACTTCGCAT GGTACAAAGC
GATGGCCAGT ATGTATCGCC AGGGGTGTTT TTACCTGCTG CTGAGCGTTA CAACTTAGCG
CCTCGAGTAG ACCGTTGGGT TATCGATAAT TTATTGAAGT GGGGTGGTAA TAATTTAGCC
ATATGGGAAC AGCTTTCAAT GGTGTCGGTG AATTTGTCTG CGATGTCACT TGCCGACAAT
AAGTTCATGA CTTGGCTCGA AATGCGCTTA ATGGTTGAAC CTGAACTGGT GAGTAAATTA
TGTTTTGAAA TTACCGAAAC CGCAGCGGTA AGCCAATTAG ACCAAGCTAC TGGGTTAATT
GAGTTGTTAC GGCCATTTGG TTGTAAGATT GCATTAGATG ATTTTGGTTC TGGCTTTTCC
AGCTTTGCGT ATTTAAAGTG TCTTGATGTT GATTACGTTA AAATTGACGG CCAATTTGTG
GTGAATTTAT GCGAAAACCG CAGTGATAAA GCTATTGTTT CGGCGATATG TCAGCTCGGT
AAAGACATGG GTTTTGAAGT TATCGCAGAG TTTGTTGAAA ACACCGACAT TGGTGTATAT
CTGAAAAATA TTGGTGTCGA TTATGCGCAA GGCTATGCCA TTAATAAACC GACACGATTA
GCTGAATTAC AACACGGTTT ACGGACTCCT TGGTTAACAT AA
 
Protein sequence
MADSTQQLLK SVFTNGPIEG NDTSVLSLLN QALELVCQRL ECSAAFVLTS QYDKLFAVDT 
DIIDTSEQQC VSHFGASPAS EALFNKHLQD NLSLCESLFN SHQSIIYPHS PEKSFTADEN
RLLTPLLDIF NQLDIDCKHL ALSPVLHVGN VKVVLGTMCA SDANPVVGQQ DDPCAFVQKL
LDDTAYQLAS SLELRRLSVL LDSKDKQYQE LFQLLPMPCA LIDLHNNVVL QNDASKQNLP
ITVGQSLFSL LREEDHPLLL DTLHIVREGI LRQAWCEVPL RNGVQIYWYK FSFCHALNKQ
QQLLLMIEDV TERYRLADEL SFHSNYDVLT GLPNRLQFEN MLEELLKDEE HIPACIAFLD
LDQFQVVNDL SGHQAGDVLL QQVAVRLKQL LRKDDVVARL GGDEFGLLMH YSDTASAQQV
AKRICQQLFD HEFTWKGIKH NISASIGIAK VDYVDSDIYG VMSKADAACR LAKEEGRNRW
HFYNPDDPQM HMMYNQMLAS VDITGALALN QFELFYQLIE PLDKPDTGIH MEILLRMVQS
DGQYVSPGVF LPAAERYNLA PRVDRWVIDN LLKWGGNNLA IWEQLSMVSV NLSAMSLADN
KFMTWLEMRL MVEPELVSKL CFEITETAAV SQLDQATGLI ELLRPFGCKI ALDDFGSGFS
SFAYLKCLDV DYVKIDGQFV VNLCENRSDK AIVSAICQLG KDMGFEVIAE FVENTDIGVY
LKNIGVDYAQ GYAINKPTRL AELQHGLRTP WLT