| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3272 |
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| Symbol | |
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| ID | 4280174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3916025 |
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| End bp | 3918286 |
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| Gene Length | 2262 bp |
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| Protein Length | 753 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136090 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_751947 |
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| Protein GI | 114564433 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGATA GCACCCAGCA ACTATTGAAA AGTGTTTTTA CAAATGGACC TATTGAGGGT
AATGATACTT CGGTGTTATC ACTGCTTAAT CAAGCATTAG AATTAGTCTG TCAAAGGCTA
GAATGCAGCG CTGCATTTGT GTTGACTAGT CAATATGATA AATTATTTGC CGTTGATACT
GATATTATCG ACACTTCAGA GCAACAATGT GTCAGTCATT TTGGTGCTTC ACCTGCATCA
GAAGCGCTGT TTAACAAGCA TTTACAAGAT AATTTATCAC TGTGCGAATC ATTATTTAAC
AGCCATCAAT CAATCATTTA TCCCCATTCC CCAGAGAAAT CATTTACCGC TGATGAAAAT
CGACTCCTTA CACCGCTTTT AGACATCTTT AATCAACTCG ATATTGATTG TAAGCATCTT
GCTCTGAGTC CTGTTTTGCA CGTTGGTAAT GTCAAAGTTG TTTTAGGCAC TATGTGTGCA
TCCGATGCTA ATCCCGTTGT GGGTCAGCAA GACGATCCTT GTGCGTTTGT GCAAAAGTTA
CTCGATGACA CCGCATACCA ATTAGCCTCT TCACTTGAGC TTCGTCGTTT ATCCGTGCTT
TTAGACAGTA AAGATAAACA GTATCAAGAG CTTTTTCAGT TACTGCCGAT GCCATGTGCG
CTGATTGATT TACACAATAA TGTTGTATTG CAAAATGATG CGAGTAAACA AAATTTGCCC
ATTACAGTCG GGCAGAGTTT ATTTTCGTTG TTACGAGAAG AAGATCATCC CTTGTTACTC
GATACCTTAC ATATCGTTCG AGAAGGTATT TTACGCCAAG CCTGGTGTGA AGTACCGTTA
CGAAATGGGG TTCAAATTTA CTGGTATAAA TTCAGCTTTT GTCATGCGCT TAATAAGCAG
CAACAGTTAT TGTTAATGAT TGAAGATGTC ACCGAGCGTT ATCGACTTGC CGATGAGTTA
TCGTTTCATT CAAATTATGA TGTGCTAACC GGATTACCAA ATCGATTGCA GTTCGAAAAC
ATGCTTGAAG AGTTATTAAA AGATGAAGAG CATATACCTG CTTGTATTGC CTTTCTCGAT
CTCGATCAAT TTCAAGTGGT AAATGATCTT AGCGGCCATC AAGCGGGTGA TGTGTTGCTG
CAACAAGTGG CTGTGCGATT AAAACAATTA TTACGTAAAG ACGATGTTGT TGCGCGTTTA
GGCGGCGATG AGTTTGGCTT ATTGATGCAC TATTCAGATA CCGCATCGGC GCAACAAGTG
GCAAAACGAA TTTGCCAACA GTTGTTTGAT CATGAATTTA CTTGGAAAGG TATCAAGCAC
AATATTAGTG CCAGTATTGG TATTGCCAAA GTCGATTATG TTGACTCAGA TATTTACGGC
GTGATGAGTA AAGCTGATGC CGCTTGCCGT CTGGCCAAAG AAGAAGGCCG TAACCGTTGG
CATTTTTATA ATCCTGACGA TCCACAAATG CACATGATGT ATAACCAAAT GTTGGCATCT
GTGGATATTA CAGGCGCACT GGCGTTAAAT CAGTTTGAGT TATTTTATCA ATTAATCGAG
CCGCTCGATA AACCCGACAC TGGTATCCAC ATGGAAATTC TACTTCGCAT GGTACAAAGC
GATGGCCAGT ATGTATCGCC AGGGGTGTTT TTACCTGCTG CTGAGCGTTA CAACTTAGCG
CCTCGAGTAG ACCGTTGGGT TATCGATAAT TTATTGAAGT GGGGTGGTAA TAATTTAGCC
ATATGGGAAC AGCTTTCAAT GGTGTCGGTG AATTTGTCTG CGATGTCACT TGCCGACAAT
AAGTTCATGA CTTGGCTCGA AATGCGCTTA ATGGTTGAAC CTGAACTGGT GAGTAAATTA
TGTTTTGAAA TTACCGAAAC CGCAGCGGTA AGCCAATTAG ACCAAGCTAC TGGGTTAATT
GAGTTGTTAC GGCCATTTGG TTGTAAGATT GCATTAGATG ATTTTGGTTC TGGCTTTTCC
AGCTTTGCGT ATTTAAAGTG TCTTGATGTT GATTACGTTA AAATTGACGG CCAATTTGTG
GTGAATTTAT GCGAAAACCG CAGTGATAAA GCTATTGTTT CGGCGATATG TCAGCTCGGT
AAAGACATGG GTTTTGAAGT TATCGCAGAG TTTGTTGAAA ACACCGACAT TGGTGTATAT
CTGAAAAATA TTGGTGTCGA TTATGCGCAA GGCTATGCCA TTAATAAACC GACACGATTA
GCTGAATTAC AACACGGTTT ACGGACTCCT TGGTTAACAT AA
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| Protein sequence | MADSTQQLLK SVFTNGPIEG NDTSVLSLLN QALELVCQRL ECSAAFVLTS QYDKLFAVDT
DIIDTSEQQC VSHFGASPAS EALFNKHLQD NLSLCESLFN SHQSIIYPHS PEKSFTADEN
RLLTPLLDIF NQLDIDCKHL ALSPVLHVGN VKVVLGTMCA SDANPVVGQQ DDPCAFVQKL
LDDTAYQLAS SLELRRLSVL LDSKDKQYQE LFQLLPMPCA LIDLHNNVVL QNDASKQNLP
ITVGQSLFSL LREEDHPLLL DTLHIVREGI LRQAWCEVPL RNGVQIYWYK FSFCHALNKQ
QQLLLMIEDV TERYRLADEL SFHSNYDVLT GLPNRLQFEN MLEELLKDEE HIPACIAFLD
LDQFQVVNDL SGHQAGDVLL QQVAVRLKQL LRKDDVVARL GGDEFGLLMH YSDTASAQQV
AKRICQQLFD HEFTWKGIKH NISASIGIAK VDYVDSDIYG VMSKADAACR LAKEEGRNRW
HFYNPDDPQM HMMYNQMLAS VDITGALALN QFELFYQLIE PLDKPDTGIH MEILLRMVQS
DGQYVSPGVF LPAAERYNLA PRVDRWVIDN LLKWGGNNLA IWEQLSMVSV NLSAMSLADN
KFMTWLEMRL MVEPELVSKL CFEITETAAV SQLDQATGLI ELLRPFGCKI ALDDFGSGFS
SFAYLKCLDV DYVKIDGQFV VNLCENRSDK AIVSAICQLG KDMGFEVIAE FVENTDIGVY
LKNIGVDYAQ GYAINKPTRL AELQHGLRTP WLT
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